View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10438_low_8 (Length: 415)
Name: NF10438_low_8
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10438_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Original strand, 47288271 - 47288671
Alignment:
| Q |
9 |
gagaagaatggtattgcgggtttgatcctgaaccctaacacatcaaatgtctccaactactttaactatctcagctgcacgtacgggactgtttcttgat |
108 |
Q |
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| T |
47288271 |
gagaagaatggtattgcgggtttgatcctgaaccctaacacatcaaatgtctccaactactttaactatctcagctgcacgtacgggactgtttcttgat |
47288370 |
T |
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| Q |
109 |
tcatacctaaataaacaaaacttattattttcaggcttggaaaaaatggaatgatgggacaccattagagttactggacatgacattgagagattcatac |
208 |
Q |
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| T |
47288371 |
tcatacctaaataaacaaagcgtattattttcaggcttggaaaaaatggaatgatgggacaccattagagttactggacatgacattgagagattcatac |
47288470 |
T |
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| Q |
209 |
acaagtgttgaagtaacaagatgcatccatgttgggttatgttgtgttcaagaagatccagatcaaagaccatcgatgcagtcagtagttttactgctaa |
308 |
Q |
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| T |
47288471 |
acaagtgttgaagtaacaagatgcatccatgttgggttatgttgtgttcaagaagatccagatcaaagaccatcgatgcagacagtagttttactgctaa |
47288570 |
T |
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| Q |
309 |
gtagccattctgttactcttgaaccacctcaacgaccagcgggttatattagtagcaaaactgatcaaagctttgcaacaaaagattttgatagctcaga |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47288571 |
gtagccattctgttactcttgaaccacctcaacgaccagcgggttatattagtagcaaaactgatcaaagctttgcaacaaaagattttgatagctcaga |
47288670 |
T |
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| Q |
409 |
c |
409 |
Q |
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| T |
47288671 |
c |
47288671 |
T |
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