View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10438_low_9 (Length: 392)
Name: NF10438_low_9
Description: NF10438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10438_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 41235039 - 41234675
Alignment:
| Q |
18 |
gtagcataactgcaaccgcgactaccaaagtcaagtacaagtccaaacaagaccattctctaacggcgtcaagttcaagtccaagcaaaaattcaacctt |
117 |
Q |
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| T |
41235039 |
gtagcataactgcaaccgcgactaccaaagtcaagtacaagtccaaacaagaccattctctaacggcgtcaagttcaagtccaagcaaaaattcaacctt |
41234940 |
T |
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| Q |
118 |
tcacaatggnnnnnnnnnnnnnnnnngaagatggaaaagctactattatgctttctcatgtggccaccaagagcttgtccaatggaaaactcaagtccac |
217 |
Q |
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| T |
41234939 |
tcacaatggtctttttttgattttttgaagatggaaaaactactattatgctttctcatgtggccaccaagagcttgtccaatggaaaactcaagtccac |
41234840 |
T |
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| Q |
218 |
aaatagggcatggatgcatctttggtttcatgtttggtaacttgtacatgagttttggtctcttgtgacttgctctatggccacctaaagcttgaaaaga |
317 |
Q |
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| T |
41234839 |
aaatagggcatggatgcatctttggtttcatgtttggtaacttgtacatgagttttggtctcttgtgacttgctctatggccacctaaagcttgaaaaga |
41234740 |
T |
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| Q |
318 |
agagaattctttgttgcatgttttgcacttaaaaccacattctttcaatgtattaggctcctttg |
382 |
Q |
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| T |
41234739 |
agagaattctttgttgcatgttttgcacttaaaaccacattctttcaatgtattaggctcttttg |
41234675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 40689761 - 40689687
Alignment:
| Q |
270 |
ttttggtctcttgtgacttgctctatggccacctaaagcttgaaaagaagagaattctttgttgcatgttttgca |
344 |
Q |
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| T |
40689761 |
ttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgca |
40689687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 40243776 - 40243844
Alignment:
| Q |
276 |
tctcttgtgacttgctctatggccacctaaagcttgaaaagaagagaattctttgttgcatgttttgca |
344 |
Q |
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| T |
40243776 |
tctcttgtggctagccctatggccaccaagggcttgaaaagatgagaattttttgttgcacgttttgca |
40243844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 312
Target Start/End: Original strand, 9612877 - 9612909
Alignment:
| Q |
280 |
ttgtgacttgctctatggccacctaaagcttga |
312 |
Q |
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| T |
9612877 |
ttgtgacttgctctatggccacctaatgcttga |
9612909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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