View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10439_high_3 (Length: 279)
Name: NF10439_high_3
Description: NF10439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10439_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 122 - 279
Target Start/End: Complemental strand, 34131544 - 34131383
Alignment:
| Q |
122 |
ttgataagtcgacgaccctaacttaataaaaccgattaaattnnnnnnnttgggcat----ggcaagtttggttgcaaatttgcaacacctcgtagattc |
217 |
Q |
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| T |
34131544 |
ttgataagtcgacgaccctaacttaataaaaccgattaaattaaaaaaattgggcatggcaggcaagtttggttgcaaatttgcaacacctcgtggattc |
34131445 |
T |
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| Q |
218 |
cgcaatctagtgacaagtactactaataacgtcaaatcacatctcctactcaaacaaactcc |
279 |
Q |
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| T |
34131444 |
cgcaatctagtgacaagtactactaataacgtcaaatcacatctcctactcaaacaaactcc |
34131383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 34131621 - 34131586
Alignment:
| Q |
27 |
atacatctaaaactaagataaaataatacaggttta |
62 |
Q |
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| T |
34131621 |
atacatctaaaactaagataaaataatagaggttta |
34131586 |
T |
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