View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10439_low_2 (Length: 314)
Name: NF10439_low_2
Description: NF10439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10439_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 1754668 - 1754954
Alignment:
| Q |
17 |
cattatggcggacacacttgtagataataaccactcatatttgaatattatactacttatactcgatatatgggatacctctcttgtattatttttgttt |
116 |
Q |
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| T |
1754668 |
cattatggcggacacacttgtagataataaccactcatatttgaatattatactacttatactcgatatatgggatacctctcttgtattatttttgttt |
1754767 |
T |
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| Q |
117 |
aactcatttctactcgatatgagatgagactaatcactcacgcttcaattctagtgtatatcacacaactattaaagagaagaaactcatgagtccatta |
216 |
Q |
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| T |
1754768 |
aactcatttctactcgatatgagatgagactaatcactcacgcttcaattctagtgtatatcacacaactattaaagagaagaaactcatgagtccatta |
1754867 |
T |
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| Q |
217 |
tcaagaaacaaacctttttgctaggaaatctatgacagagactgtctgaggtatgtatgattcaccccattctataaatccatctct |
303 |
Q |
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| T |
1754868 |
tcaagaaacaaacctttttgctaggaaatctatgacagagactgtctgaggtatgtatgattcaccccattctataaatccatctct |
1754954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 1717943 - 1718020
Alignment:
| Q |
226 |
aaacctttttgctaggaaatctatgacagagactgtctgaggtatgtatgattcaccccattctataaatccatctct |
303 |
Q |
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| T |
1717943 |
aaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctct |
1718020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 1739414 - 1739490
Alignment:
| Q |
227 |
aacctttttgctaggaaatctatgacagagactgtctgaggtatgtatgattcaccccattctataaatccatctct |
303 |
Q |
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| T |
1739414 |
aacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctct |
1739490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 1749262 - 1749339
Alignment:
| Q |
226 |
aaacctttttgctaggaaatctatgacagagactgtctgaggtatgtatgattcaccccattctataaatccatctct |
303 |
Q |
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|||||||| ||||| |||||| || |||| ||||||||||||||||| || |||||||||||| || |||||||||| |
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| T |
1749262 |
aaacctttgtgctaagaaatcaatcacagctactgtctgaggtatgtaagaatcaccccattctgtatatccatctct |
1749339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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