View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10439_low_3 (Length: 291)
Name: NF10439_low_3
Description: NF10439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10439_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 26 - 275
Target Start/End: Complemental strand, 31360486 - 31360237
Alignment:
| Q |
26 |
agcaaaggaccgagaggtgaaggtagttgcggtagatataagactagacaaagggttcaggtacatgcgaataacctatgaacttttggaataaaatgag |
125 |
Q |
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| T |
31360486 |
agcaaaggaccgagaggtgaaggtagttgccgtagatataagactagacaaagggttcaggtacatgcgaataacctatgaacttttggaataaaatgag |
31360387 |
T |
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| Q |
126 |
taattagacttaatgggccaagccaccatagaaagaatgagaatatagagctatgttggcaaggtacttcttttgttactataagtnnnnnnnnnncttg |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
31360386 |
taattagacttaatgggccaagccaccatagaaagaatgagaatatagagctatgttggcaaggtacttcttttgttactataaataaaataaaaacttg |
31360287 |
T |
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| Q |
226 |
atactttggagattacctcatccatatgtagtgaattcacgaggcttatg |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31360286 |
atactttggagattacctcatccatatgtagtgaattcacgaggcttatg |
31360237 |
T |
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