View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10439_low_7 (Length: 249)
Name: NF10439_low_7
Description: NF10439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10439_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 34131400 - 34131238
Alignment:
| Q |
1 |
cctactcaaacaaactcccatgttctgttcgccctcgttatctccgtctcccaaaatcacaacacagtaaagtaccagaacacaacctcacttccagcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34131400 |
cctactcaaacaaactcccatgttctgttcgccctcgttatctccgtctcccaaaatcacaacacagtaaagtaccagaacacaacctcacttccagca- |
34131302 |
T |
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| Q |
101 |
caaaacaaatcaaccaaaaacctctcccttctccattcttcaccatgtcagctattcgcaccctccacttccaactcttca |
181 |
Q |
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|||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34131301 |
---------tcaaccaaaaacctct--cttc------cttcaccatgtcagctactcgcaccctccacttccaactcttca |
34131238 |
T |
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Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 9618909 - 9619014
Alignment:
| Q |
76 |
cagaacacaacctcacttccagcatcaaaacaaatcaaccaaaaacctctc--ccttctccattcttcaccatgtcagctattcgcaccctccacttcca |
173 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||| ||| | | |||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
9618909 |
cagaacacaacctcacttccagcatcaa--caaatcaactaaaaaactcccttcattctccatcctgcaccatgtcagctattcgcaccctccacttcca |
9619006 |
T |
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| Q |
174 |
actcttca |
181 |
Q |
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|||||||| |
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| T |
9619007 |
actcttca |
9619014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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