View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10439_low_9 (Length: 239)
Name: NF10439_low_9
Description: NF10439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10439_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 45779597 - 45779825
Alignment:
| Q |
1 |
ttaaatgtgtgatagtaacacatactgagatagagaagaatatgtatcacaatgtaattttatttaaaagtcaagggtacttccatattttcatta---- |
96 |
Q |
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| T |
45779597 |
ttaaatgtgtgatagtaacacacactgagatagagaagaatatgcatcacaatgtaattttatttaaaagtcaagggtactttcatattttcattataaa |
45779696 |
T |
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| Q |
97 |
---------ttttttggtggggtgggtcatagcccacccaagtcctaaaggggctctaccactacttgcaccgttctcagcaccaccaccaatgttcaca |
187 |
Q |
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| T |
45779697 |
aaatgattattttttggtggggtgggtcatggcccacccgagtcctaaaggggctctgccactacttgcactgttctcagcagcaccaccaatgttcaca |
45779796 |
T |
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| Q |
188 |
tgtctagtatcccctgtcgtcacctgagc |
216 |
Q |
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| T |
45779797 |
tgtctagtatcccatatcgtcacctgagc |
45779825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 38764080 - 38764148
Alignment:
| Q |
1 |
ttaaatgtgtgatagtaacacatactgagatagagaagaatatgtatcacaatgtaattttatttaaaa |
69 |
Q |
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| T |
38764080 |
ttaaaagtgtgattgtaacacatactgagatagagaagattgagaatcacaaaataattctatttaaaa |
38764148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 40510957 - 40511003
Alignment:
| Q |
97 |
ttttttggtggggtgggtcatagcccacccaagtcctaaaggggctc |
143 |
Q |
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| T |
40510957 |
ttttttggtggggtgggttatagctcacccgagccctaaaggggctc |
40511003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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