View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1043_high_13 (Length: 206)
Name: NF1043_high_13
Description: NF1043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1043_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 49827232 - 49827055
Alignment:
| Q |
16 |
acaacaagtgtcctttataatcaaatctcatttcaaatgcaacacgagtaactctggattttcaattaatttcttccactcgttgcaaaatcttgtaact |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49827232 |
acaacaagtgtcctttataatcaaatctcatttcaaatgcaacacgagtaactctggattttcaattaatttcttccactcgttgcaaaatcttgcaact |
49827133 |
T |
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| Q |
116 |
gttgctccgtccaagactctgtgatctgcaccaatattaacctgaaagcagaaaaaagaatcagataatgcagttcat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49827132 |
gttgctccgtccaagactctgtgatctgcaccaatattaacctgaaagcagaaaaaagaatcagataatgcagttcat |
49827055 |
T |
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