View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1043_high_4 (Length: 336)
Name: NF1043_high_4
Description: NF1043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1043_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 29 - 328
Target Start/End: Complemental strand, 42614494 - 42614197
Alignment:
| Q |
29 |
aattcctaccccaaataataaagaatatgttttcttccattagtgtagggcatgcatgacatatggtaagaataacacctacttatatcgatgttaaatt |
128 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42614494 |
aattcctactccaaataataaagaatatgttttcttccattagtgtagggcatgcatgacatatggtaagaataacacctacttatatcgatgttaaatt |
42614395 |
T |
|
| Q |
129 |
tagtatgcatatttatattttacgtaagtatttttcaataaacaaagattgggtacatagattaacatcctaatattgtattatcatttatgtcagatga |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42614394 |
tagtatgcatatttatattttacgtaagtatttttcaataaacaaagattgggtacatagattaacatcctaatattgtattatcatttatgtcagatga |
42614295 |
T |
|
| Q |
229 |
taaactattaagatcctgacagttttaaatagttcgccttatacttttgtttcaaannnnnnnnntgctcagatttctttaccagtatcatatattcttc |
328 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42614294 |
taaactattaagatccggacagttttaaatagttcgccttatacttttgtttcaaa--ccccccctgctcagatttctttaccagtatcatatattcttc |
42614197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University