View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1043_low_2 (Length: 729)
Name: NF1043_low_2
Description: NF1043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1043_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 30 - 462
Target Start/End: Complemental strand, 9563406 - 9562971
Alignment:
| Q |
30 |
gctaggtagtttctcataaataaataaatatataagtaaatgtttggtaatccacatcttacttacatgattttgtaaagcttgatgtatcaaactcatc |
129 |
Q |
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| T |
9563406 |
gctaggtagtttcacataaataaatatataagtaaataaatgtttggtaatccacatcttactaacatgattttgtaaaggttgatgtatcaaactcatc |
9563307 |
T |
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| Q |
130 |
gtacttatggatttcacaacaccaaatgctcaaatatgagaaattgttgatttaaacatgcactccaatatctcaaatatcagnnnnnnnn-acttatgg |
228 |
Q |
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| T |
9563306 |
atacttatggatttcacagcaccaaatgctcaaatatgagaaattgttgatttaaacatgcactccaatatctcaaatatcagtttttttttacttatgg |
9563207 |
T |
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| Q |
229 |
aacaaagattattttactcattctagaacattccaatttatttattcatttataaaaatatatacatagggaatatccttgtagcatgctgggccaactc |
328 |
Q |
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| T |
9563206 |
aacaaagattatttgactctttctagaacattcctatttatttattcatttataaaaatatatacatagggaatatccttgtagcatgctgggccaactc |
9563107 |
T |
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| Q |
329 |
agtgtcatactgtaattatcatatattaacaggataattgata--tataccatgaacttttatatttttgactaaatacgatgaacttttttcttagata |
426 |
Q |
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| T |
9563106 |
agtgtcatactgtgattatcatatattaactggataattgatatatataccatgaacttttatatttttgactaaatacgatgaacttttttcttagata |
9563007 |
T |
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| Q |
427 |
tgcatttctttactgttatactataactaaaaaata |
462 |
Q |
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| T |
9563006 |
tgcatttctttactgttatactataactaaaaaata |
9562971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 221 - 459
Target Start/End: Complemental strand, 9571439 - 9571189
Alignment:
| Q |
221 |
acttatggaacaaagattattttactcattctagaacattccaatttatttattcatttataaaaatatatacatagggaatatccttgtagcatgctgg |
320 |
Q |
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| T |
9571439 |
acttatggaacaaatattattttacactttctagaacattccattttatttata----tataaaaatatatacacagagaatatccttgtggcatgcagg |
9571344 |
T |
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| Q |
321 |
gccaactcagtgtcat---actgtaattatcatatattaacaggataattgatatatacca-----------tgaacttttatatttttgactaaatacg |
406 |
Q |
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| T |
9571343 |
gcacactcagtgtcatcatactgtaattatcatatattaacaggataattgatatataccatgaatgttaggtgaacttttatttttttgactaaatacc |
9571244 |
T |
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| Q |
407 |
atgaacttttttctt--agatatgcatttctttactgttatactataactaaaaa |
459 |
Q |
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| T |
9571243 |
atgaacttttttttttaagatatgcatttctttactgttatactataactaaaaa |
9571189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 552 - 679
Target Start/End: Complemental strand, 9562846 - 9562719
Alignment:
| Q |
552 |
ttctgtcacagaacacagcatgtaactgaacaacctctcacctgtgttcagagtctgagcctgaggtatgttccgttccaacactttggtttgtttaagg |
651 |
Q |
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| T |
9562846 |
ttctgtcacagaatacagcatgtaactgaacaacctctcacctgtgttcagagtctgagcctgaggtatgttccgttccaacactttggcttgtttaaag |
9562747 |
T |
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| Q |
652 |
tttcatgaatttgtgttgttgtctgtgg |
679 |
Q |
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| T |
9562746 |
tttcatgaatttgtgttgttgtctgtgg |
9562719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 553 - 679
Target Start/End: Complemental strand, 9570942 - 9570819
Alignment:
| Q |
553 |
tctgtcacagaacacagcatgtaactgaacaacctctcacctgtgttcagagtctgagcctgaggtatgttccgttccaacactttggtttgtttaaggt |
652 |
Q |
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| T |
9570942 |
tctgccacagaacacaacatttaactgaacaacctctca---gtgttcagagtctgatactgaggtatgttctgttccaacactttggtttgtttaaggt |
9570846 |
T |
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| Q |
653 |
ttcatgaatttgtgttgttgtctgtgg |
679 |
Q |
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| T |
9570845 |
ttcatgaatttgtgttgttgtctgtgg |
9570819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 9571533 - 9571483
Alignment:
| Q |
136 |
atggatttcacaacaccaaatgctcaaatatgagaaattgttgatttaaac |
186 |
Q |
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| T |
9571533 |
atggatttcacaacaccaaatgctcaaatatgagaaattttttatttaaac |
9571483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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