View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1043_low_25 (Length: 217)
Name: NF1043_low_25
Description: NF1043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1043_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 19277053 - 19276914
Alignment:
| Q |
24 |
gtcttggtttaggagacaaaaagagagagaga--ttaactaaacaacagtgacaaacaaataatagtactagtagttgtttatattaaattaacaaaacc |
121 |
Q |
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| T |
19277053 |
gtcttggtttaggagacaaaaagagagagagagattaactaaacaacagtgacaaacaaataatagtactagtagttgtttacattaaattaacaaaacc |
19276954 |
T |
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| Q |
122 |
ttttgttgaggtgatttggcttttgattgattctttgttg |
161 |
Q |
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| T |
19276953 |
ttttgttgaggtgatttggcttttgattgattctgtgttg |
19276914 |
T |
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