View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1043_low_5 (Length: 454)

Name: NF1043_low_5
Description: NF1043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1043_low_5
NF1043_low_5
[»] chr4 (3 HSPs)
chr4 (31-351)||(16520046-16520365)
chr4 (347-439)||(16523715-16523807)
chr4 (58-124)||(48474837-48474903)
[»] chr8 (2 HSPs)
chr8 (43-345)||(33729974-33730277)
chr8 (69-267)||(3640458-3640656)
[»] chr3 (5 HSPs)
chr3 (43-349)||(46171057-46171364)
chr3 (31-190)||(43638409-43638561)
chr3 (43-255)||(14854808-14855020)
chr3 (84-252)||(11570181-11570349)
chr3 (179-255)||(31223245-31223321)
[»] chr5 (1 HSPs)
chr5 (195-349)||(28448052-28448206)
[»] chr7 (1 HSPs)
chr7 (82-144)||(37033663-37033725)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 31 - 351
Target Start/End: Original strand, 16520046 - 16520365
Alignment:
Q  31 aagagagccaggacccacaacccaaacaccctaccggaaccaacacatgataggttgcgcctcccactcgtataaggaaaagaggctgacagagctctta 130  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16520046 aagagagccaggacccacaacccaaacaccctaccggaaccagcacaggataggttgcgcctcccactcgtataaggaaaaaaggctgacagagctctta 16520145  T
Q  131 cccaggaaccacttccaagataagagcttcaccttatccactaaaagatcgacagatggaatccctcccgcaaaaattatatcattacgagagttccaaa 230  Q
    ||||||||||||||||||||| |||| || ||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  16520146 cccaggaaccacttccaagatgagagttttaccttatccactaaaagatcgacaggtggag-ccctcccgcaaaaattatatcattacgagagttccaaa 16520244  T
Q  231 cagcccacacaacagcaagccaaaccaaaattaaaccaagagaaactttcttacccgatcccaaccccacaaaactaagaaaactacctaaaatattcga 330  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16520245 cagcccacacaacagcaagccaaaccaaaattaaactaagagaaactttcttacccgatcccaacgccacaaaactaagaaaactacctaaaatattcga 16520344  T
Q  331 gtgaggcactaactcccaaac 351  Q
    |||||||||||||||||||||    
T  16520345 gtgaggcactaactcccaaac 16520365  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 347 - 439
Target Start/End: Original strand, 16523715 - 16523807
Alignment:
Q  347 caaaccacctagaaaagtgatgatccaagtagacgtggcacaacataatgcaattgatcattgttgaggtgcagttcaacttgactggagcag 439  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  16523715 caaaccacctagaaaagtgatgatccaagtagatgtggcacaacataatgcaattgatcattgttgaggtgcggttcaacttgaccggagcag 16523807  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 48474903 - 48474837
Alignment:
Q  58 accctaccggaaccaacacatgataggttgcgcctcccactcgtataaggaaaagaggctgacagag 124  Q
    |||||||| ||||||||||| || || ||||||||||||||| ||||||||  ||||||| ||||||    
T  48474903 accctaccagaaccaacacaggaaagtttgcgcctcccactcatataaggagcagaggctaacagag 48474837  T

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Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 43 - 345
Target Start/End: Original strand, 33729974 - 33730277
Alignment:
Q  43 acccacaacccaaacaccctaccggaaccaacacatgataggttgcgcctcccactcgtataaggaaaagaggctgacagagctcttacccaggaaccac 142  Q
    |||||| ||||||||||||||||| ||||| |||| || |  ||| ||||||||||| |||||| |  ||||||||||| | |||||||||| ||||||     
T  33729974 acccactacccaaacaccctaccgaaaccagcacaggacaacttgtgcctcccactcatataagaagcagaggctgacaaaactcttacccatgaaccat 33730073  T
Q  143 ttccaagataagagcttcaccttatccactaaaagatcgacagatggaa-tccctcccgcaaaaattatatcattacgagagttccaaacagcccacaca 241  Q
    ||||||||| ||||||||||| |||| |||||||| |||||| || ||| | |||||||||||||| |||||||||| ||||||||||||| |  |||||    
T  33730074 ttccaagatgagagcttcaccatatcaactaaaagctcgaca-atcgaagtgcctcccgcaaaaatgatatcattacaagagttccaaacatcatacaca 33730172  T
Q  242 acagcaagccaaaccaaaattaaaccaagagaaactttcttacccga-tcccaaccccacaaaactaagaaaactacctaaaatattcgagtgaggcact 340  Q
    ||| |||| |||||||||| |||||| |||| ||| ||||||||  | ||||||||||  |||||||||||||||||||| |||| |  |||||||||||    
T  33730173 acaacaagtcaaaccaaaagtaaacctagagcaacattcttaccaaattcccaaccccgaaaaactaagaaaactacctagaatacttaagtgaggcact 33730272  T
Q  341 aactc 345  Q
    |||||    
T  33730273 aactc 33730277  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 267
Target Start/End: Complemental strand, 3640656 - 3640458
Alignment:
Q  69 accaacacatgataggttgcgcctcccactcgtataaggaaaagaggctgacagagctcttacccaggaaccacttccaagataagagcttcaccttatc 168  Q
    |||| ||||||||||||||| |||| ||||||||||||||  |||| |   || |||||||| |  |||||||||||||||| | || |||||||  |||    
T  3640656 accagcacatgataggttgcacctctcactcgtataaggagcagagacacgcaaagctcttagcttggaaccacttccaagagacgaacttcacccgatc 3640557  T
Q  169 cactaaaagatcgacagatggaatccctcccgcaaaaattatatcattacgagagttccaaacagcccacacaacagcaagccaaaccaaaattaaacc 267  Q
    ||| |  |  |||||| |  || ||||||| ||||| |  | |||||||||  ||||| | | || |||||||| |||||||||||| |||| ||||||    
T  3640556 cacaatcaactcgacataatgagtccctccagcaaagaccaaatcattacggaagttctagaaagaccacacaatagcaagccaaactaaaagtaaacc 3640458  T

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Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 43 - 349
Target Start/End: Original strand, 46171057 - 46171364
Alignment:
Q  43 acccacaacccaaa-caccctaccggaaccaacacatgataggttgcgcctcccactcgtataaggaaaagaggctgacagagctcttacccaggaacca 141  Q
    |||||| ||||||| | ||||||||| |||| |||| || | | ||||||||||||||  |||||||  ||||||||||| | |||||||||||||||||    
T  46171057 acccaccacccaaagccccctaccggtaccagcacaggacatgatgcgcctcccactcaaataaggagcagaggctgacataactcttacccaggaacca 46171156  T
Q  142 cttccaagataagagcttcaccttatccactaaaagatcgacagatggaatccctcccgcaaaaattatatcattacgagagttccaaacagcccacaca 241  Q
    || ||| ||  ||||||||||| |||| |  |  |  || || |  ||| |||   |||||||||| ||||||||||||| ||||||||||| |||||||    
T  46171157 ctgccaggaagagagcttcaccctatcaataattaactcaaccgtcggagtcctgtccgcaaaaataatatcattacgagggttccaaacagtccacaca 46171256  T
Q  242 acagcaagccaaaccaaaattaaaccaagagaaactttcttacccgatcccaaccccacaaaactaagaaaactacctaaaatattcgagtgaggcacta 341  Q
    ||||||||||||||||||  |||||| ||||  ||||||||||| ||||| ||||||  |||||| ||||||||||||| |||| |||||||||||||||    
T  46171257 acagcaagccaaaccaaacgtaaacctagagctactttcttaccagatcctaacccctgaaaactgagaaaactacctagaatactcgagtgaggcacta 46171356  T
Q  342 actcccaa 349  Q
    | ||||||    
T  46171357 aatcccaa 46171364  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 43638561 - 43638409
Alignment:
Q  31 aagagagccaggacccacaacccaaacaccctaccggaaccaacacatgataggttgcgcctcccactcgtataaggaaaagaggctgacagagctctta 130  Q
    |||||||| ||||||||| || |||||||||||| ||||||| |||| || ||| ||||| |||||||| ||||||||  |||||       ||||||||    
T  43638561 aagagagctaggacccacgactcaaacaccctactggaaccagcacaggacaggctgcgcttcccactcatataaggagcagagg-------agctctta 43638469  T
Q  131 cccaggaaccacttccaagataagagcttcaccttatccactaaaagatcgacagatgga 190  Q
    ||||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  43638468 cccagaaaccacttccaagatgagagcttcaccctatccactaaaagattgacagatgga 43638409  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 43 - 255
Target Start/End: Complemental strand, 14855020 - 14854808
Alignment:
Q  43 acccacaacccaaacaccctaccggaaccaacacatgataggttgcgcctcccactcgtataaggaaaagaggctgacagagctcttacccaggaaccac 142  Q
    |||||||||||||||||||||||  ||| | |||| || | ||| ||||||||| ||||||||| |  | | |||| |||| |||||||||| |||||||    
T  14855020 acccacaacccaaacaccctaccaaaactagcacaggacatgttacgcctcccaatcgtataagaagcatatgctggcagaactcttacccatgaaccac 14854921  T
Q  143 ttccaagataagagcttcaccttatccactaaaagatcgacagatggaatccctcccgc-aaaaattatatcattacgagagttccaaacagcccacaca 241  Q
    || || ||  ||||||||||| |||| || | |||  ||||||  ||| | ||||  || |||||| |||||| || |||||||||||  ||||||||||    
T  14854920 tttcacgaagagagcttcaccctatctacaagaagcacgacagtcggagttcctcatgcaaaaaataatatca-tatgagagttccaataagcccacaca 14854822  T
Q  242 acagcaagccaaac 255  Q
    |||||||| |||||    
T  14854821 acagcaagtcaaac 14854808  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 252
Target Start/End: Original strand, 11570181 - 11570349
Alignment:
Q  84 gttgcgcctcccactcgtataaggaaaagaggctgacagagctcttacccaggaaccacttccaagataagagcttcaccttatccactaaaagatcgac 183  Q
    |||||| ||||||||| ||||||||  ||||||  || ||||||||  | | |||||||||||||||  ||| ||| ||| ||||||| |  | ||||||    
T  11570181 gttgcgtctcccactcatataaggagcagaggcaaactgagctcttcacaatgaaccacttccaagaggagaacttgaccctatccacaagcaaatcgac 11570280  T
Q  184 agatggaatccctcccgcaaaaattatatcattacgagagttccaaacagcccacacaacagcaagcca 252  Q
     |  ||| |||||||  |||| || ||||||||||  |||||||  |||| ||||||||||||||||||    
T  11570281 ggtcggagtccctccatcaaagataatatcattacaggagttcccgacagtccacacaacagcaagcca 11570349  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 31223321 - 31223245
Alignment:
Q  179 tcgacagatggaatccctcccgcaaaaattatatcattacgagagttccaaacagcccacacaacagcaagccaaac 255  Q
    |||||||| ||| ||||||  ||||| || | |||||| || ||||||||||||| |||||||||||||||||||||    
T  31223321 tcgacagaaggagtccctcgagcaaagatcaaatcattgcgggagttccaaacagaccacacaacagcaagccaaac 31223245  T

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Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 195 - 349
Target Start/End: Complemental strand, 28448206 - 28448052
Alignment:
Q  195 ctcccgcaaaaattatatcattacgagagttccaaacagcccacacaacagcaagccaaaccaaaattaaaccaagagaaactttcttacccgatcccaa 294  Q
    |||||| |||||| |||||||||||||||||    | | ||||||||| |||||||||||||||||||||||| |||| ||||||||||||  || ||||    
T  28448206 ctcccgtaaaaataatatcattacgagagttttctagaacccacacaatagcaagccaaaccaaaattaaacctagagcaactttcttaccaaattccaa 28448107  T
Q  295 ccccacaaaactaagaaaactacctaaaatattcgagtgaggcactaactcccaa 349  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  28448106 ctccacaaaactaagaaaactacctaaaatactcgagtgaggcactaaatcccaa 28448052  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 37033725 - 37033663
Alignment:
Q  82 aggttgcgcctcccactcgtataaggaaaagaggctgacagagctcttacccaggaaccactt 144  Q
    |||||||||||||||||| ||||| ||  |||||| |||| | ||||| ||||||||||||||    
T  37033725 aggttgcgcctcccactcatataaagagtagaggcggacataactctttcccaggaaccactt 37033663  T

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