View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1043_low_6 (Length: 347)

Name: NF1043_low_6
Description: NF1043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1043_low_6
NF1043_low_6
[»] chr8 (21 HSPs)
chr8 (243-304)||(18645752-18645813)
chr8 (297-337)||(8608229-8608269)
chr8 (301-337)||(27691150-27691186)
chr8 (304-337)||(600759-600792)
chr8 (300-337)||(33762770-33762807)
chr8 (305-337)||(601761-601793)
chr8 (305-337)||(27692894-27692926)
chr8 (305-337)||(29237151-29237183)
chr8 (305-337)||(29239244-29239276)
chr8 (305-337)||(35510876-35510908)
chr8 (305-337)||(38548888-38548920)
chr8 (306-337)||(33707207-33707238)
chr8 (304-335)||(34681125-34681156)
chr8 (305-335)||(13282478-13282508)
chr8 (305-335)||(26238726-26238756)
chr8 (305-335)||(42943485-42943515)
chr8 (298-335)||(33708917-33708954)
chr8 (305-337)||(13106804-13106836)
chr8 (303-335)||(22272332-22272364)
chr8 (305-337)||(33761069-33761101)
chr8 (305-337)||(35509214-35509246)
[»] chr7 (15 HSPs)
chr7 (299-337)||(29996606-29996644)
chr7 (305-337)||(56330-56362)
chr7 (305-337)||(27666157-27666189)
chr7 (305-337)||(47384294-47384326)
chr7 (304-335)||(23904582-23904613)
chr7 (306-337)||(29994907-29994938)
chr7 (305-336)||(35693434-35693465)
chr7 (300-335)||(37113936-37113971)
chr7 (305-335)||(13169742-13169772)
chr7 (305-335)||(35403678-35403708)
chr7 (305-335)||(39859323-39859353)
chr7 (305-335)||(46437107-46437137)
chr7 (304-337)||(78071-78104)
chr7 (306-335)||(24226582-24226611)
chr7 (305-337)||(35401969-35402001)
[»] chr1 (25 HSPs)
chr1 (303-337)||(37346019-37346053)
chr1 (298-335)||(25279047-25279084)
chr1 (302-335)||(37344339-37344372)
chr1 (305-337)||(8167942-8167974)
chr1 (305-337)||(8169625-8169657)
chr1 (305-337)||(25276742-25276774)
chr1 (305-337)||(26223587-26223619)
chr1 (305-337)||(27089336-27089368)
chr1 (305-337)||(33599187-33599219)
chr1 (305-337)||(34776569-34776601)
chr1 (305-337)||(46583648-46583680)
chr1 (305-335)||(2869579-2869609)
chr1 (305-335)||(3013570-3013600)
chr1 (305-335)||(4856060-4856090)
chr1 (305-335)||(6818772-6818802)
chr1 (305-335)||(25278462-25278492)
chr1 (305-335)||(31236819-31236849)
chr1 (305-335)||(34778232-34778262)
chr1 (305-335)||(45044949-45044979)
chr1 (305-335)||(52641888-52641918)
chr1 (304-337)||(4854409-4854442)
chr1 (306-335)||(6816866-6816895)
chr1 (308-337)||(33602736-33602765)
chr1 (306-335)||(50554164-50554193)
chr1 (305-337)||(46582010-46582042)
[»] chr4 (14 HSPs)
chr4 (304-337)||(4173797-4173830)
chr4 (304-337)||(43519423-43519456)
chr4 (305-337)||(319273-319305)
chr4 (305-337)||(320957-320989)
chr4 (305-337)||(4169686-4169718)
chr4 (305-337)||(33264382-33264414)
chr4 (305-337)||(43507167-43507199)
chr4 (305-337)||(43508710-43508742)
chr4 (305-337)||(51013943-51013975)
chr4 (304-335)||(48813786-48813817)
chr4 (305-335)||(35401749-35401779)
chr4 (305-335)||(48645255-48645285)
chr4 (305-335)||(49524792-49524822)
chr4 (299-335)||(11254113-11254149)
[»] chr3 (26 HSPs)
chr3 (304-337)||(41979409-41979442)
chr3 (305-337)||(3150252-3150284)
chr3 (305-337)||(38193567-38193599)
chr3 (305-337)||(44794208-44794240)
chr3 (305-337)||(44795947-44795979)
chr3 (305-337)||(46308807-46308839)
chr3 (305-337)||(46611360-46611392)
chr3 (305-337)||(53094330-53094362)
chr3 (305-337)||(54900131-54900163)
chr3 (300-335)||(44267976-44268011)
chr3 (304-335)||(48829355-48829386)
chr3 (305-335)||(611281-611311)
chr3 (305-335)||(2226266-2226296)
chr3 (305-335)||(7884958-7884988)
chr3 (305-335)||(27899195-27899225)
chr3 (305-335)||(30598337-30598367)
chr3 (299-337)||(35903819-35903857)
chr3 (305-335)||(41977750-41977780)
chr3 (305-335)||(46112487-46112517)
chr3 (305-335)||(53190873-53190903)
chr3 (305-335)||(54898437-54898467)
chr3 (306-335)||(2379042-2379071)
chr3 (305-337)||(38191895-38191927)
chr3 (307-335)||(43765139-43765167)
chr3 (305-337)||(46310493-46310525)
chr3 (305-337)||(53187742-53187774)
[»] scaffold0058 (3 HSPs)
scaffold0058 (305-337)||(3294-3326)
scaffold0058 (305-337)||(4466-4498)
scaffold0058 (305-337)||(14400-14432)
[»] chr6 (12 HSPs)
chr6 (305-337)||(9400092-9400124)
chr6 (305-337)||(18645160-18645192)
chr6 (305-337)||(32518554-32518586)
chr6 (293-335)||(6902956-6902996)
chr6 (296-335)||(20525393-20525432)
chr6 (305-335)||(8605384-8605414)
chr6 (305-335)||(10569978-10570008)
chr6 (305-335)||(32516877-32516907)
chr6 (306-335)||(11355223-11355252)
chr6 (299-335)||(11357253-11357289)
chr6 (305-337)||(13610690-13610722)
chr6 (305-337)||(13613674-13613706)
[»] chr5 (18 HSPs)
chr5 (305-337)||(2854418-2854450)
chr5 (303-335)||(7267841-7267873)
chr5 (305-337)||(8539675-8539707)
chr5 (305-337)||(21843049-21843081)
chr5 (304-335)||(36057707-36057738)
chr5 (305-335)||(2852886-2852916)
chr5 (305-335)||(12738795-12738825)
chr5 (305-335)||(12801618-12801648)
chr5 (305-335)||(17574318-17574348)
chr5 (307-337)||(17577992-17578022)
chr5 (305-335)||(30463900-30463930)
chr5 (305-335)||(34327635-34327665)
chr5 (305-335)||(34328886-34328916)
chr5 (302-335)||(8541330-8541363)
chr5 (305-334)||(28813827-28813856)
chr5 (299-335)||(7269505-7269541)
chr5 (305-337)||(24541304-24541336)
chr5 (301-337)||(42473699-42473735)
[»] chr2 (9 HSPs)
chr2 (305-337)||(14387349-14387381)
chr2 (305-337)||(16764668-16764700)
chr2 (299-335)||(39664862-39664898)
chr2 (305-335)||(16763076-16763106)
chr2 (305-335)||(19908361-19908391)
chr2 (305-335)||(42517558-42517588)
chr2 (305-335)||(44709859-44709889)
chr2 (300-337)||(24205593-24205630)
chr2 (305-337)||(40561935-40561967)
[»] scaffold0564 (1 HSPs)
scaffold0564 (307-335)||(8264-8292)
[»] scaffold0345 (1 HSPs)
scaffold0345 (299-335)||(1614-1650)


Alignment Details
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 18645752 - 18645813
Alignment:
Q  243 agttcggttgatgatctaagcgatactaaaggagtttaaagcacatttgctattataaaaag 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18645752 agttcggttgatgatctaagcgatactaaaggagtttaaagcacatttgctattataaaaag 18645813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 8608229 - 8608269
Alignment:
Q  297 ataaaaaggactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  8608229 ataaaaaggactaataccttaaattcgtccttgaattttga 8608269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 27691150 - 27691186
Alignment:
Q  301 aaaggactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  27691150 aaaggactaatacctcaaattcgtccttgaattttga 27691186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 600759 - 600792
Alignment:
Q  304 ggactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||||||||||||||||||||    
T  600759 ggactaatacctcaaattcgtccttgaattttga 600792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 33762807 - 33762770
Alignment:
Q  300 aaaaggactaatacctcaaattcgtccttgaattttga 337  Q
    |||| |||||||||||||||||||||||||||||||||    
T  33762807 aaaatgactaatacctcaaattcgtccttgaattttga 33762770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 601793 - 601761
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  601793 gactaatacctcaaattcgtccttgaattttga 601761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 27692926 - 27692894
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  27692926 gactaatacctcaaattcgtccttgaattttga 27692894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 29237151 - 29237183
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  29237151 gactaatacctcaaattcgtccttgaattttga 29237183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 29239276 - 29239244
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  29239276 gactaatacctcaaattcgtccttgaattttga 29239244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 35510908 - 35510876
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  35510908 gactaatacctcaaattcgtccttgaattttga 35510876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 38548920 - 38548888
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  38548920 gactaatacctcaaattcgtccttgaattttga 38548888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 337
Target Start/End: Original strand, 33707207 - 33707238
Alignment:
Q  306 actaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||||||||||||||||||    
T  33707207 actaatacctcaaattcgtccttgaattttga 33707238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 335
Target Start/End: Complemental strand, 34681156 - 34681125
Alignment:
Q  304 ggactaatacctcaaattcgtccttgaatttt 335  Q
    ||||||||||||||||||||||||||||||||    
T  34681156 ggactaatacctcaaattcgtccttgaatttt 34681125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 13282478 - 13282508
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  13282478 gactaatacctcaaattcgtccttgaatttt 13282508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 26238726 - 26238756
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  26238726 gactaatacctcaaattcgtccttgaatttt 26238756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 42943515 - 42943485
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  42943515 gactaatacctcaaattcgtccttgaatttt 42943485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 33708954 - 33708917
Alignment:
Q  298 taaaaaggactaatacctcaaattcgtccttgaatttt 335  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  33708954 taaataggactaatacctcaaattcatccttgaatttt 33708917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 13106804 - 13106836
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||| |||||||||||||||||||||    
T  13106804 gactaataccttaaattcgtccttgaattttga 13106836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 22272332 - 22272364
Alignment:
Q  303 aggactaatacctcaaattcgtccttgaatttt 335  Q
    ||||||||||||||||||||||| |||||||||    
T  22272332 aggactaatacctcaaattcgtctttgaatttt 22272364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 33761069 - 33761101
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||||||| |||||||||||    
T  33761069 gactaatacctcaaattcgtctttgaattttga 33761101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 35509214 - 35509246
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||| |||||||||||||||    
T  35509214 gactaatacctcaaattagtccttgaattttga 35509246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 337
Target Start/End: Complemental strand, 29996644 - 29996606
Alignment:
Q  299 aaaaaggactaatacctcaaattcgtccttgaattttga 337  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  29996644 aaaaacgactaatacctcaaattcgtccttgaattttga 29996606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 56330 - 56362
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  56330 gactaatacctcaaattcgtccttgaattttga 56362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 27666189 - 27666157
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  27666189 gactaatacctcaaattcgtccttgaattttga 27666157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 47384294 - 47384326
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  47384294 gactaatacctcaaattcgtccttgaattttga 47384326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 335
Target Start/End: Original strand, 23904582 - 23904613
Alignment:
Q  304 ggactaatacctcaaattcgtccttgaatttt 335  Q
    ||||||||||||||||||||||||||||||||    
T  23904582 ggactaatacctcaaattcgtccttgaatttt 23904613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 337
Target Start/End: Original strand, 29994907 - 29994938
Alignment:
Q  306 actaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||||||||||||||||||    
T  29994907 actaatacctcaaattcgtccttgaattttga 29994938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 336
Target Start/End: Complemental strand, 35693465 - 35693434
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttg 336  Q
    ||||||||||||||||||||||||||||||||    
T  35693465 gactaatacctcaaattcgtccttgaattttg 35693434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 335
Target Start/End: Original strand, 37113936 - 37113971
Alignment:
Q  300 aaaaggactaatacctcaaattcgtccttgaatttt 335  Q
    |||| |||||||||||||||||||||||||||||||    
T  37113936 aaaaagactaatacctcaaattcgtccttgaatttt 37113971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 13169772 - 13169742
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  13169772 gactaatacctcaaattcgtccttgaatttt 13169742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 35403708 - 35403678
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  35403708 gactaatacctcaaattcgtccttgaatttt 35403678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 39859353 - 39859323
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  39859353 gactaatacctcaaattcgtccttgaatttt 39859323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 46437107 - 46437137
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  46437107 gactaatacctcaaattcgtccttgaatttt 46437137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 78104 - 78071
Alignment:
Q  304 ggactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||| |||||||||||    
T  78104 ggactaatacctcaaattcgtctttgaattttga 78071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 24226582 - 24226611
Alignment:
Q  306 actaatacctcaaattcgtccttgaatttt 335  Q
    ||||||||||||||||||||||||||||||    
T  24226582 actaatacctcaaattcgtccttgaatttt 24226611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 35401969 - 35402001
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||| ||||||||||||||||||||||||    
T  35401969 gactaatatctcaaattcgtccttgaattttga 35402001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 337
Target Start/End: Complemental strand, 37346053 - 37346019
Alignment:
Q  303 aggactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||||    
T  37346053 aggactaatacctcaaattcgtccttgaattttga 37346019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 25279084 - 25279047
Alignment:
Q  298 taaaaaggactaatacctcaaattcgtccttgaatttt 335  Q
    |||||| |||||||||||||||||||||||||||||||    
T  25279084 taaaaatgactaatacctcaaattcgtccttgaatttt 25279047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 37344339 - 37344372
Alignment:
Q  302 aaggactaatacctcaaattcgtccttgaatttt 335  Q
    ||||||||||||||||||||||||||||||||||    
T  37344339 aaggactaatacctcaaattcgtccttgaatttt 37344372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 8167942 - 8167974
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  8167942 gactaatacctcaaattcgtccttgaattttga 8167974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 8169657 - 8169625
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  8169657 gactaatacctcaaattcgtccttgaattttga 8169625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 25276742 - 25276774
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  25276742 gactaatacctcaaattcgtccttgaattttga 25276774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 26223587 - 26223619
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  26223587 gactaatacctcaaattcgtccttgaattttga 26223619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 27089368 - 27089336
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  27089368 gactaatacctcaaattcgtccttgaattttga 27089336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 33599187 - 33599219
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  33599187 gactaatacctcaaattcgtccttgaattttga 33599219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 34776569 - 34776601
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  34776569 gactaatacctcaaattcgtccttgaattttga 34776601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 46583680 - 46583648
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  46583680 gactaatacctcaaattcgtccttgaattttga 46583648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 2869579 - 2869609
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  2869579 gactaatacctcaaattcgtccttgaatttt 2869609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 3013600 - 3013570
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  3013600 gactaatacctcaaattcgtccttgaatttt 3013570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 4856090 - 4856060
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  4856090 gactaatacctcaaattcgtccttgaatttt 4856060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 6818802 - 6818772
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  6818802 gactaatacctcaaattcgtccttgaatttt 6818772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 25278492 - 25278462
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  25278492 gactaatacctcaaattcgtccttgaatttt 25278462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 31236819 - 31236849
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  31236819 gactaatacctcaaattcgtccttgaatttt 31236849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 34778262 - 34778232
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  34778262 gactaatacctcaaattcgtccttgaatttt 34778232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 45044949 - 45044979
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  45044949 gactaatacctcaaattcgtccttgaatttt 45044979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 52641888 - 52641918
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  52641888 gactaatacctcaaattcgtccttgaatttt 52641918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 4854409 - 4854442
Alignment:
Q  304 ggactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||| |||||||||||||||||||||||    
T  4854409 ggactaatacttcaaattcgtccttgaattttga 4854442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 6816866 - 6816895
Alignment:
Q  306 actaatacctcaaattcgtccttgaatttt 335  Q
    ||||||||||||||||||||||||||||||    
T  6816866 actaatacctcaaattcgtccttgaatttt 6816895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 337
Target Start/End: Complemental strand, 33602765 - 33602736
Alignment:
Q  308 taatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||||||||||||||||    
T  33602765 taatacctcaaattcgtccttgaattttga 33602736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 50554164 - 50554193
Alignment:
Q  306 actaatacctcaaattcgtccttgaatttt 335  Q
    ||||||||||||||||||||||||||||||    
T  50554164 actaatacctcaaattcgtccttgaatttt 50554193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 46582010 - 46582042
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||| |||||||||||||||    
T  46582010 gactaatacctcaaatttgtccttgaattttga 46582042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 4173830 - 4173797
Alignment:
Q  304 ggactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||||||||||||||||||||    
T  4173830 ggactaatacctcaaattcgtccttgaattttga 4173797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 43519423 - 43519456
Alignment:
Q  304 ggactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||||||||||||||||||||    
T  43519423 ggactaatacctcaaattcgtccttgaattttga 43519456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 319273 - 319305
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  319273 gactaatacctcaaattcgtccttgaattttga 319305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 320989 - 320957
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  320989 gactaatacctcaaattcgtccttgaattttga 320957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 4169686 - 4169718
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  4169686 gactaatacctcaaattcgtccttgaattttga 4169718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 33264382 - 33264414
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  33264382 gactaatacctcaaattcgtccttgaattttga 33264414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 43507167 - 43507199
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  43507167 gactaatacctcaaattcgtccttgaattttga 43507199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 43508742 - 43508710
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  43508742 gactaatacctcaaattcgtccttgaattttga 43508710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 51013975 - 51013943
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  51013975 gactaatacctcaaattcgtccttgaattttga 51013943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 335
Target Start/End: Original strand, 48813786 - 48813817
Alignment:
Q  304 ggactaatacctcaaattcgtccttgaatttt 335  Q
    ||||||||||||||||||||||||||||||||    
T  48813786 ggactaatacctcaaattcgtccttgaatttt 48813817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 35401749 - 35401779
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  35401749 gactaatacctcaaattcgtccttgaatttt 35401779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 48645255 - 48645285
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  48645255 gactaatacctcaaattcgtccttgaatttt 48645285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 49524822 - 49524792
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  49524822 gactaatacctcaaattcgtccttgaatttt 49524792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 11254113 - 11254149
Alignment:
Q  299 aaaaaggactaatacctcaaattcgtccttgaatttt 335  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  11254113 aaaaatgacaaatacctcaaattcgtccttgaatttt 11254149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 41979442 - 41979409
Alignment:
Q  304 ggactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||||||||||||||||||||    
T  41979442 ggactaatacctcaaattcgtccttgaattttga 41979409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 3150252 - 3150284
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  3150252 gactaatacctcaaattcgtccttgaattttga 3150284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 38193599 - 38193567
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  38193599 gactaatacctcaaattcgtccttgaattttga 38193567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 44794208 - 44794240
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  44794208 gactaatacctcaaattcgtccttgaattttga 44794240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 44795979 - 44795947
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  44795979 gactaatacctcaaattcgtccttgaattttga 44795947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 46308807 - 46308839
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  46308807 gactaatacctcaaattcgtccttgaattttga 46308839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 46611392 - 46611360
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  46611392 gactaatacctcaaattcgtccttgaattttga 46611360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 53094362 - 53094330
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  53094362 gactaatacctcaaattcgtccttgaattttga 53094330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 54900163 - 54900131
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  54900163 gactaatacctcaaattcgtccttgaattttga 54900131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 335
Target Start/End: Original strand, 44267976 - 44268011
Alignment:
Q  300 aaaaggactaatacctcaaattcgtccttgaatttt 335  Q
    |||| |||||||||||||||||||||||||||||||    
T  44267976 aaaatgactaatacctcaaattcgtccttgaatttt 44268011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 335
Target Start/End: Original strand, 48829355 - 48829386
Alignment:
Q  304 ggactaatacctcaaattcgtccttgaatttt 335  Q
    ||||||||||||||||||||||||||||||||    
T  48829355 ggactaatacctcaaattcgtccttgaatttt 48829386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 611311 - 611281
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  611311 gactaatacctcaaattcgtccttgaatttt 611281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 2226296 - 2226266
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  2226296 gactaatacctcaaattcgtccttgaatttt 2226266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 7884988 - 7884958
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  7884988 gactaatacctcaaattcgtccttgaatttt 7884958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 27899225 - 27899195
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  27899225 gactaatacctcaaattcgtccttgaatttt 27899195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 30598337 - 30598367
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  30598337 gactaatacctcaaattcgtccttgaatttt 30598367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 35903819 - 35903857
Alignment:
Q  299 aaaaaggactaatacctcaaattcgtccttgaattttga 337  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  35903819 aaaaacgactaatacctcaaatttgtccttgaattttga 35903857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 41977750 - 41977780
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  41977750 gactaatacctcaaattcgtccttgaatttt 41977780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 46112487 - 46112517
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  46112487 gactaatacctcaaattcgtccttgaatttt 46112517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 53190903 - 53190873
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  53190903 gactaatacctcaaattcgtccttgaatttt 53190873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 54898437 - 54898467
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  54898437 gactaatacctcaaattcgtccttgaatttt 54898467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Complemental strand, 2379071 - 2379042
Alignment:
Q  306 actaatacctcaaattcgtccttgaatttt 335  Q
    ||||||||||||||||||||||||||||||    
T  2379071 actaatacctcaaattcgtccttgaatttt 2379042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 38191895 - 38191927
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||| ||||||||    
T  38191895 gactaatacctcaaattcgtccttaaattttga 38191927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 43765139 - 43765167
Alignment:
Q  307 ctaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||    
T  43765139 ctaatacctcaaattcgtccttgaatttt 43765167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 46310525 - 46310493
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||||||| |||||||||||    
T  46310525 gactaatacctcaaattcgtctttgaattttga 46310493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 53187742 - 53187774
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||| |||||||||||||||    
T  53187742 gactaatacctcaaatttgtccttgaattttga 53187774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 3294 - 3326
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  3294 gactaatacctcaaattcgtccttgaattttga 3326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 4466 - 4498
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  4466 gactaatacctcaaattcgtccttgaattttga 4498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 14432 - 14400
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  14432 gactaatacctcaaattcgtccttgaattttga 14400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 9400124 - 9400092
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  9400124 gactaatacctcaaattcgtccttgaattttga 9400092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 18645192 - 18645160
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  18645192 gactaatacctcaaattcgtccttgaattttga 18645160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 32518586 - 32518554
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  32518586 gactaatacctcaaattcgtccttgaattttga 32518554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 6902996 - 6902956
Alignment:
Q  293 tattataaaaaggactaatacctcaaattcgtccttgaatttt 335  Q
    ||||||||||  |||||||||||||||||||||||||||||||    
T  6902996 tattataaaa--gactaatacctcaaattcgtccttgaatttt 6902956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 20525432 - 20525393
Alignment:
Q  296 tataaaaaggactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  20525432 tataaaaacgactaatacctcaaattcgtctttgaatttt 20525393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 8605414 - 8605384
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  8605414 gactaatacctcaaattcgtccttgaatttt 8605384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 10570008 - 10569978
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  10570008 gactaatacctcaaattcgtccttgaatttt 10569978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 32516877 - 32516907
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  32516877 gactaatacctcaaattcgtccttgaatttt 32516907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 11355223 - 11355252
Alignment:
Q  306 actaatacctcaaattcgtccttgaatttt 335  Q
    ||||||||||||||||||||||||||||||    
T  11355223 actaatacctcaaattcgtccttgaatttt 11355252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 11357289 - 11357253
Alignment:
Q  299 aaaaaggactaatacctcaaattcgtccttgaatttt 335  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  11357289 aaaaaagactaatacatcaaattcgtccttgaatttt 11357253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 13610690 - 13610722
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||| |||||||||||||||||||||    
T  13610690 gactaataccttaaattcgtccttgaattttga 13610722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 13613706 - 13613674
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||| |||||||||||||||||||||    
T  13613706 gactaataccttaaattcgtccttgaattttga 13613674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 2854450 - 2854418
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  2854450 gactaatacctcaaattcgtccttgaattttga 2854418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 7267841 - 7267873
Alignment:
Q  303 aggactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||||    
T  7267841 aggactaatacctcaaattcgtccttgaatttt 7267873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 8539675 - 8539707
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  8539675 gactaatacctcaaattcgtccttgaattttga 8539707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 21843081 - 21843049
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  21843081 gactaatacctcaaattcgtccttgaattttga 21843049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 335
Target Start/End: Complemental strand, 36057738 - 36057707
Alignment:
Q  304 ggactaatacctcaaattcgtccttgaatttt 335  Q
    ||||||||||||||||||||||||||||||||    
T  36057738 ggactaatacctcaaattcgtccttgaatttt 36057707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 2852886 - 2852916
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  2852886 gactaatacctcaaattcgtccttgaatttt 2852916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 12738825 - 12738795
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  12738825 gactaatacctcaaattcgtccttgaatttt 12738795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 12801648 - 12801618
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  12801648 gactaatacctcaaattcgtccttgaatttt 12801618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 17574318 - 17574348
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  17574318 gactaatacctcaaattcgtccttgaatttt 17574348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 337
Target Start/End: Complemental strand, 17578022 - 17577992
Alignment:
Q  307 ctaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||    
T  17578022 ctaatacctcaaattcgtccttgaattttga 17577992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 30463900 - 30463930
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  30463900 gactaatacctcaaattcgtccttgaatttt 30463930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 34327635 - 34327665
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  34327635 gactaatacctcaaattcgtccttgaatttt 34327665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 34328916 - 34328886
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  34328916 gactaatacctcaaattcgtccttgaatttt 34328886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Complemental strand, 8541363 - 8541330
Alignment:
Q  302 aaggactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||| |||||||||    
T  8541363 aaggactaatacctcaaattcgtcattgaatttt 8541330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 334
Target Start/End: Complemental strand, 28813856 - 28813827
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattt 334  Q
    ||||||||||||||||||||||||||||||    
T  28813856 gactaatacctcaaattcgtccttgaattt 28813827  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 7269541 - 7269505
Alignment:
Q  299 aaaaaggactaatacctcaaattcgtccttgaatttt 335  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  7269541 aaaaatgactaatacctcaaattcgtctttgaatttt 7269505  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 24541336 - 24541304
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||||||| |||||||||||    
T  24541336 gactaatacctcaaattcgtcattgaattttga 24541304  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 42473735 - 42473699
Alignment:
Q  301 aaaggactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||||| | |||||||||||||||    
T  42473735 aaaggactaatacctcaaaatagtccttgaattttga 42473699  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 14387349 - 14387381
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  14387349 gactaatacctcaaattcgtccttgaattttga 14387381  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 16764700 - 16764668
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||||||||||||||||    
T  16764700 gactaatacctcaaattcgtccttgaattttga 16764668  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 39664898 - 39664862
Alignment:
Q  299 aaaaaggactaatacctcaaattcgtccttgaatttt 335  Q
    ||||| |||||||||||||||||||||||||||||||    
T  39664898 aaaaatgactaatacctcaaattcgtccttgaatttt 39664862  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 16763076 - 16763106
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  16763076 gactaatacctcaaattcgtccttgaatttt 16763106  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 19908391 - 19908361
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  19908391 gactaatacctcaaattcgtccttgaatttt 19908361  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 42517558 - 42517588
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  42517558 gactaatacctcaaattcgtccttgaatttt 42517588  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Complemental strand, 44709889 - 44709859
Alignment:
Q  305 gactaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||||    
T  44709889 gactaatacctcaaattcgtccttgaatttt 44709859  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 24205593 - 24205630
Alignment:
Q  300 aaaaggactaatacctcaaattcgtccttgaattttga 337  Q
    |||||||||||||||||||| | |||||||||||||||    
T  24205593 aaaaggactaatacctcaaaatagtccttgaattttga 24205630  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 40561967 - 40561935
Alignment:
Q  305 gactaatacctcaaattcgtccttgaattttga 337  Q
    ||||||||||||||||||||| |||||||||||    
T  40561967 gactaatacctcaaattcgtctttgaattttga 40561935  T

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Target: scaffold0564 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 8264 - 8292
Alignment:
Q  307 ctaatacctcaaattcgtccttgaatttt 335  Q
    |||||||||||||||||||||||||||||    
T  8264 ctaatacctcaaattcgtccttgaatttt 8292  T

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Target: scaffold0345 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 1650 - 1614
Alignment:
Q  299 aaaaaggactaatacctcaaattcgtccttgaatttt 335  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  1650 aaaaaagactaatacatcaaattcgtccttgaatttt 1614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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