View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1043_low_8 (Length: 333)
Name: NF1043_low_8
Description: NF1043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1043_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1863473 - 1863685
Alignment:
| Q |
1 |
tcagtagctaggttcgaggagcacatgacttttcatagttgggttaatattaagacttgataagttatcaaaggtttaccaatagtgttgcgtaattgtg |
100 |
Q |
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| T |
1863473 |
tcagtagctaggttcgaggagcacatgacttttcatagttgggttaatattaagacttgataagttatcaaaggtttaccaatagtgttgcgtaattgtg |
1863572 |
T |
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| Q |
101 |
ttccttcttttccctcatttccctttcctgaaatctcttacttattctatattctgtttggttcaccctacatgtatgagaaattgctaacaacaaattt |
200 |
Q |
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| T |
1863573 |
ttccttcttttccctcatttccctttcctgaaatctcttacttattctatattctgtttggttcaccctacatgtatgagaaattgctaacaacaaattt |
1863672 |
T |
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| Q |
201 |
atatgcctcatta |
213 |
Q |
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| T |
1863673 |
atatgcctcatta |
1863685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 212 - 333
Target Start/End: Original strand, 1864476 - 1864597
Alignment:
| Q |
212 |
taaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacattttccatcactgtctttataattgctatggtttaatatttggactat |
311 |
Q |
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| T |
1864476 |
taaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacattttccatcactgcctttataattgctatggtttaatatttggactat |
1864575 |
T |
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| Q |
312 |
catttttaagaggttggtaaat |
333 |
Q |
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| T |
1864576 |
catttttaagaggttgataaat |
1864597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 51576285 - 51576228
Alignment:
| Q |
208 |
tcattaaatgtaacatgttttatttaattttcaattcttgtttatttaatcttacatt |
265 |
Q |
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||||||| ||| |||||||||| ||||||||||||||||||||| ||||||| ||||| |
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| T |
51576285 |
tcattaattgttacatgttttaattaattttcaattcttgtttacttaatctcacatt |
51576228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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