View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1043_low_9 (Length: 331)
Name: NF1043_low_9
Description: NF1043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1043_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 36490223 - 36489921
Alignment:
| Q |
17 |
caaatcaatatatgcgcatccttctcttgtttagtaattttattccactgtgacttggatctccacttatctgataatgtgttattaactttttctttac |
116 |
Q |
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| T |
36490223 |
caaatcaatatatgcgcatccttcttttgtttagtaattttattccactgtgacttggatctccacttatccgataatgtgttattaactttttctttac |
36490124 |
T |
|
| Q |
117 |
ttaaaattctcacagtcctgatgatcgaggaactaataat---tttatttttatctacattggatatttttaattaaatgttcagtcccataaaactgta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36490123 |
ttaaaattctcacagtcctgatgatcgaggaactaataatatttttttttttatctacattggatatttttaattaaatgttcagtcccataaaactgta |
36490024 |
T |
|
| Q |
214 |
gaaaagtgtagcacaaagagaaagaacattgcagatatatcaccttcatattaattatatatctaactatcaaatatgtcacccttgccttttcccgcct |
313 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36490023 |
gaaaagtgtagcacaaagagatagaacattgcagatatatcaccttcatattaattatatatctaactatcaaatatgtcacccttgccttttcccgcct |
36489924 |
T |
|
| Q |
314 |
atg |
316 |
Q |
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||| |
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| T |
36489923 |
atg |
36489921 |
T |
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