View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10440_high_1 (Length: 578)

Name: NF10440_high_1
Description: NF10440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10440_high_1
NF10440_high_1
[»] chr5 (9 HSPs)
chr5 (191-572)||(19567151-19567533)
chr5 (16-98)||(19567641-19567723)
chr5 (197-389)||(23277621-23277812)
chr5 (27-80)||(26058590-26058643)
chr5 (35-82)||(23277972-23278019)
chr5 (25-65)||(25011503-25011543)
chr5 (425-516)||(20251255-20251346)
chr5 (290-371)||(26058879-26058959)
chr5 (25-65)||(22950542-22950581)
[»] chr3 (7 HSPs)
chr3 (196-517)||(30059736-30060051)
chr3 (16-95)||(10289643-10289722)
chr3 (20-80)||(14262587-14262647)
chr3 (25-79)||(2279011-2279065)
chr3 (25-76)||(15450489-15450540)
chr3 (20-90)||(2277799-2277869)
chr3 (295-363)||(16018064-16018132)
[»] chr7 (8 HSPs)
chr7 (245-390)||(11230899-11231044)
chr7 (216-312)||(9257402-9257498)
chr7 (216-312)||(9312755-9312851)
chr7 (423-572)||(9257615-9257763)
chr7 (423-572)||(9312490-9312638)
chr7 (423-572)||(20465711-20465858)
chr7 (252-298)||(16202909-16202955)
chr7 (28-95)||(11240046-11240113)
[»] chr8 (2 HSPs)
chr8 (16-95)||(29319124-29319203)
chr8 (25-94)||(1273452-1273520)
[»] scaffold0485 (1 HSPs)
scaffold0485 (19-94)||(4337-4412)
[»] chr2 (5 HSPs)
chr2 (216-334)||(9961188-9961305)
chr2 (423-482)||(9961369-9961428)
chr2 (26-94)||(9960956-9961021)
chr2 (25-83)||(43938370-43938427)
chr2 (26-87)||(34898097-34898157)
[»] scaffold0113 (1 HSPs)
scaffold0113 (24-77)||(23748-23801)
[»] scaffold0002 (1 HSPs)
scaffold0002 (197-337)||(367312-367450)
[»] chr1 (4 HSPs)
chr1 (20-92)||(23299886-23299958)
chr1 (263-370)||(3256225-3256332)
chr1 (20-65)||(25234668-25234713)
chr1 (25-69)||(30822097-30822140)
[»] scaffold0071 (1 HSPs)
scaffold0071 (25-76)||(11651-11702)
[»] chr4 (4 HSPs)
chr4 (423-483)||(19035507-19035567)
chr4 (28-95)||(11863977-11864044)
chr4 (19-75)||(25983850-25983906)
chr4 (290-376)||(16672465-16672551)
[»] scaffold0031 (2 HSPs)
scaffold0031 (27-72)||(122937-122982)
scaffold0031 (27-72)||(133813-133858)
[»] scaffold0111 (1 HSPs)
scaffold0111 (25-87)||(31538-31599)
[»] chr6 (3 HSPs)
chr6 (25-87)||(17821276-17821336)
chr6 (264-389)||(20151338-20151463)
chr6 (264-389)||(22181369-22181494)


Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 191 - 572
Target Start/End: Complemental strand, 19567533 - 19567151
Alignment:
Q  191 ttcgatcatttagcataatttgcattttaaagacgattaagtactttcactaagttaatcaattcaacatatgaatatcaatcactaattcaatcactat 290  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19567533 ttcgttcatttagcacaatttgcattttaaagacgattaagtactttcactaagttaatcaattcaacatatgaatatcaatcactaattcaatcactat 19567434  T
Q  291 tcatcatattatcatgaacatacaatcatttgcaagttatcatgttataaataatcatttcaccaaagttcgtatattttctcaaagtttgcctattttt 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19567433 tcatcatattatcatgaacatacaatcatttgcaagttatcatgttataaataatcatttcaccaaagttcgtatattttctcaaagtttgtctattttt 19567334  T
Q  391 ccacatttcatc-nnnnnnnntccaatttacatcaatcataaacatccttatcaaacctacatgtttcttctatactcattatcacagtagttaaatcgt 489  Q
    ||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19567333 ccacatttcatcaaaaaaaaatccaatttacatcaatcataaacatccttatcaaacctacatgtttcttctatactcattatcacagtagttaaatcgt 19567234  T
Q  490 aacatcaacatttcatttgagaaaaaacatcacttcaattccattccaaattcatgctcatgtatatttcaaagttcatctca 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19567233 aacatcaacatttcatttgagaaaaaacatcacttcaattccattccaaatccatgctcatgtatatttcaaagttcatctca 19567151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 19567723 - 19567641
Alignment:
Q  16 caagactcgtgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccatcataaacttcaccatctt 98  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19567723 caagactcatgaatgcatgagcatatgactcaccaaatgcatacgttcattcaagacatcaccatcataaacttcaccatctt 19567641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 197 - 389
Target Start/End: Complemental strand, 23277812 - 23277621
Alignment:
Q  197 catttagcataatttgcattttaaagacgattaagtactttcactaagttaatcaattcaacatatgaatatcaatcactaattcaatcactattcatca 296  Q
    ||||||| ||||||||||||| ||||||||||| | |||||||||||||||||| |||||||||||| |||   |||| |||||||||||| ||||||||    
T  23277812 catttagtataatttgcattt-aaagacgattacgcactttcactaagttaatccattcaacatatgcataatgatcattaattcaatcacaattcatca 23277714  T
Q  297 tattatcatgaacatacaatcatttgcaagttatcatgttataaataatcatttcaccaaagttcgtatattttctcaaagtttgcctatttt 389  Q
    | ||||||||||||||   |||||| |||| ||||||||  ||| | |||||||  ||||| || ||  |||||||||||||| | |||||||    
T  23277713 tgttatcatgaacataatgtcatttacaagctatcatgtcgtaattcatcattttgccaaattttgtcaattttctcaaagttcgtctatttt 23277621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 26058590 - 26058643
Alignment:
Q  27 aatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccat 80  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  26058590 aatgcatgaacatatgactcaccaaatgcatacgttcatacaaaacatcaccat 26058643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 23278019 - 23277972
Alignment:
Q  35 aacatatgactcaccaaatgcatacgttcattcaagacatcaccatca 82  Q
    |||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  23278019 aacatatgactcaccaaacgcatacattcatacaagacatcaccatca 23277972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 25011503 - 25011543
Alignment:
Q  25 tgaatgcatgaacatatgactcaccaaatgcatacgttcat 65  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  25011503 tgaatgcatgaacatatgattcatcaaatgcatacgttcat 25011543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 516
Target Start/End: Complemental strand, 20251346 - 20251255
Alignment:
Q  425 atcataaacatccttatcaaacctacatgtttcttctatactcattatcacagtagttaaatcgtaacatcaacatttcatttgagaaaaaa 516  Q
    |||||| |||| ||||| ||  ||||||| |||||| ||| |||||||||||||||| |||   ||||| || ||||||||||| |||||||    
T  20251346 atcatatacatacttataaattctacatgcttcttcgatattcattatcacagtagtcaaagactaacaacatcatttcatttgtgaaaaaa 20251255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 371
Target Start/End: Original strand, 26058879 - 26058959
Alignment:
Q  290 ttcatcatattatcatgaacatacaatcatttgcaagttatcatgttataaataatcatttcaccaaagttcgtatattttc 371  Q
    ||||||||||||||||||| ||| | |||||| ||||||||||  | || |||  |||||| |||||||||||| |||||||    
T  26058879 ttcatcatattatcatgaatata-agtcattttcaagttatcaaatcatgaatcctcattttaccaaagttcgtctattttc 26058959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 22950542 - 22950581
Alignment:
Q  25 tgaatgcatgaacatatgactcaccaaatgcatacgttcat 65  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  22950542 tgaatgcatgaacatatgactcaac-aatgcatacgttcat 22950581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 196 - 517
Target Start/End: Complemental strand, 30060051 - 30059736
Alignment:
Q  196 tcatttagcataatttgcattttaaagacgattaagtactttcactaagttaatcaattcaacatatgaatatcaatcactaattcaatcactattcatc 295  Q
    ||||||| |||||||||||||| ||||| ||||||| | ||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| |||    
T  30060051 tcatttaacataatttgcattt-aaagaagattaagcattttcacttagttaatcaattcaacatatgcatatcaatcactaattcaatcattattaatc 30059953  T
Q  296 atattatcatgaacatacaatcatttgcaagttatcatgttataaataatcatttcaccaaagttcgtatattttctcaaagtttgcctatttttccaca 395  Q
    ||||||||| ||||||| | |||||||||||||||||||  |||| | |||||||| ||||||| |   ||||||  ||||||| | |||||||  || |    
T  30059952 atattatcaagaacataaagtcatttgcaagttatcatgccataatttatcatttcgccaaagtccaactatttttccaaagttcgtctattttcacata 30059853  T
Q  396 tttcatcnnnnnnnntccaatttacatcaatcataaacatccttatcaaacctacatgtttcttctatactcattatcacagtagttaaatcgtaacatc 495  Q
    ||||| |         |||| ||||| |||||||||| ||| || |||| ||||||||||||||||||| | ||||||||||||||| |||| |||||||    
T  30059852 tttcaacaaaaa----ccaaattaca-caatcataaatatcgttgtcaaccctacatgtttcttctatattaattatcacagtagttcaatcataacatc 30059758  T
Q  496 aacatttcatttgagaaaaaac 517  Q
    ||||||||||||||||||||||    
T  30059757 aacatttcatttgagaaaaaac 30059736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 10289643 - 10289722
Alignment:
Q  16 caagactcgtgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccatcataaacttcaccat 95  Q
    |||| ||| |||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||    
T  10289643 caaggctcatgaatgcatgaacatatgactcaccaaatgcatatgttcatacaaaacatcaccatcataaacttcaccat 10289722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 14262587 - 14262647
Alignment:
Q  20 actcgtgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccat 80  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  14262587 actcatgaatgcatgaacatatgactcatcaaatgcatacgttcatacaagacatcaccat 14262647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 2279011 - 2279065
Alignment:
Q  25 tgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcacca 79  Q
    ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  2279011 tgaatacatgaacagatgactcaccaaatgcatacgttcatacaagacatcacca 2279065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 15450489 - 15450540
Alignment:
Q  25 tgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatca 76  Q
    |||||||||||||||||||||||||||||||||||| |||| || |||||||    
T  15450489 tgaatgcatgaacatatgactcaccaaatgcatacgatcatacacgacatca 15450540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 2277869 - 2277799
Alignment:
Q  20 actcgtgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccatcataaacttc 90  Q
    |||| |||| |||||||||||||||||| ||||||||||||||||| ||| |  |||  ||||||||||||    
T  2277869 actcatgaaggcatgaacatatgactcatcaaatgcatacgttcatacaaaatttcaggatcataaacttc 2277799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 363
Target Start/End: Complemental strand, 16018132 - 16018064
Alignment:
Q  295 catattatcatgaacatacaatcatttgcaagttatcatgttataaataatcatttcaccaaagttcgt 363  Q
    ||||||||||||| |||| | |||||||||||||| || || |||  ||| ||||||||||||||||||    
T  16018132 catattatcatgagcataaagtcatttgcaagttaccaagtcatatttaaacatttcaccaaagttcgt 16018064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 8e-41; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 245 - 390
Target Start/End: Complemental strand, 11231044 - 11230899
Alignment:
Q  245 ttaatcaattcaacatatgaatatcaatcactaattcaatcactattcatcatattatcatgaacatacaatcatttgcaagttatcatgttataaataa 344  Q
    |||||||||||| ||| || |||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||| |||||||  |||| | |    
T  11231044 ttaatcaattcatcatgtgcatatcaatcactaattaaatcattattcatcatattatcatgagcataaaatcatttgcaagctatcatgccataattca 11230945  T
Q  345 tcatttcaccaaagttcgtatattttctcaaagtttgcctattttt 390  Q
    |||||||||||||||||||||||||| |||||||| | ||||||||    
T  11230944 tcatttcaccaaagttcgtatattttttcaaagttcgtctattttt 11230899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 9257402 - 9257498
Alignment:
Q  216 tttaaagacgattaagtactttcactaagttaatcaattcaacatatgaatatcaatcactaattcaatcactattcatcatattatcatgaacata 312  Q
    |||||||||||| ||| | ||||||  ||||||||||||||||||||| ||||||||||||| | |||||| | |||||||||||||||||||||||    
T  9257402 tttaaagacgatcaagcattttcacctagttaatcaattcaacatatgcatatcaatcactattacaatcaatgttcatcatattatcatgaacata 9257498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 9312851 - 9312755
Alignment:
Q  216 tttaaagacgattaagtactttcactaagttaatcaattcaacatatgaatatcaatcactaattcaatcactattcatcatattatcatgaacata 312  Q
    |||||||||||| ||| | ||||||  ||||||||||||||||||||| ||||||||||||| | |||||| | |||||||||||||||||||||||    
T  9312851 tttaaagacgatcaagcattttcacctagttaatcaattcaacatatgcatatcaatcactattacaatcaatgttcatcatattatcatgaacata 9312755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 423 - 572
Target Start/End: Original strand, 9257615 - 9257763
Alignment:
Q  423 caatcataaacatccttatcaaacctacatgtttcttctatactcattatcacagtagttaaatcgtaacatcaacatttcatttgagaaaaaacatcac 522  Q
    |||||||||| ||||||| |||||||||||| |||||||| | ||||  |||  ||| ||||||  ||||| ||||||||||||| ||||||| | | ||    
T  9257615 caatcataaatatccttaccaaacctacatgcttcttctacattcatattcatggtaattaaatattaacaacaacatttcatttaagaaaaacctt-ac 9257713  T
Q  523 ttcaattccattccaaattcatgctcatgtatatttcaaagttcatctca 572  Q
     || | || ||||||||||||||||||  | ||||| ||||||| |||||    
T  9257714 ctccactctattccaaattcatgctcacatgtattttaaagttcgtctca 9257763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 423 - 572
Target Start/End: Complemental strand, 9312638 - 9312490
Alignment:
Q  423 caatcataaacatccttatcaaacctacatgtttcttctatactcattatcacagtagttaaatcgtaacatcaacatttcatttgagaaaaaacatcac 522  Q
    |||||||||| ||||||| |||||||||||| |||||||| | ||||  |||  ||| ||||||  ||||| ||||||||||||| ||||||| | | ||    
T  9312638 caatcataaatatccttaccaaacctacatgcttcttctacattcatattcatggtaattaaatattaacaacaacatttcatttaagaaaaacctt-ac 9312540  T
Q  523 ttcaattccattccaaattcatgctcatgtatatttcaaagttcatctca 572  Q
     || | || ||||||||||||||||||  | ||||| ||||||| |||||    
T  9312539 ctccactctattccaaattcatgctcacatgtattttaaagttcgtctca 9312490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 423 - 572
Target Start/End: Original strand, 20465711 - 20465858
Alignment:
Q  423 caatcataaacatccttatcaaacctacatgtttcttctatactcattatcacagtagttaaatcgtaacatcaacatttcatttgagaaaaaacatcac 522  Q
    |||||||||| ||||||| | | |||||||||||||| ||   | ||  ||||| || ||||||| ||||| ||||||||||||||||||||| | |  |    
T  20465711 caatcataaatatccttacccagcctacatgtttcttgtacgtttatattcacaataattaaatcataacaacaacatttcatttgagaaaaaccttg-c 20465809  T
Q  523 ttcaattccattccaaattcatgctcatgtatatttcaaagttcatctca 572  Q
    ||   |||||||||||||||||| |||| |||| |||||||||| |||||    
T  20465810 tttgtttccattccaaattcatgttcatatata-ttcaaagttcgtctca 20465858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 16202955 - 16202909
Alignment:
Q  252 attcaacatatgaatatcaatcactaattcaatcactattcatcata 298  Q
    ||||||| |||| |||||||||||||||||||||| |||||||||||    
T  16202955 attcaacttatgcatatcaatcactaattcaatcaatattcatcata 16202909  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 11240113 - 11240046
Alignment:
Q  28 atgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccatcataaacttcaccat 95  Q
    |||||| ||||||||| ||||||||  |||| |||||| ||||||||||||||||  || ||||||||    
T  11240113 atgcattaacatatgattcaccaaacacatatgttcatgcaagacatcaccatcaccaatttcaccat 11240046  T

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Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 29319124 - 29319203
Alignment:
Q  16 caagactcgtgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccatcataaacttcaccat 95  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  29319124 caagactcatgaatgcatgaacttatgagtcaccaaatgcatacgttcgtacaagacatcaccatcataaacttcaccat 29319203  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 1273520 - 1273452
Alignment:
Q  25 tgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccatcataaacttcacca 94  Q
    ||||||||||||||||| ||||||||||| |||| |||||| ||| ||||||||||||| ||||||||||    
T  1273520 tgaatgcatgaacatataactcaccaaatacatatgttcatacaaaacatcaccatcat-aacttcacca 1273452  T

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Target: scaffold0485 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 4337 - 4412
Alignment:
Q  19 gactcgtgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccatcataaacttcacca 94  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||    
T  4337 gactcatgaatgcatgaaaatatgactcaccaaatgcatatgttcatacaagacatcaccatcattaacatcacca 4412  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 216 - 334
Target Start/End: Original strand, 9961188 - 9961305
Alignment:
Q  216 tttaaagacgattaagtactttcactaagttaatcaattcaacatatgaatatcaatcactaattcaatcactattcatcatattatcatgaacatacaa 315  Q
    |||||||||||||||| | ||| || |||||||| ||| |  |||||| |||||||||||||||||||||  |||||||| ||||||||||| |||| ||    
T  9961188 tttaaagacgattaagcattttaaccaagttaataaatacctcatatgcatatcaatcactaattcaatccttattcatcttattatcatgagcata-aa 9961286  T
Q  316 tcatttgcaagttatcatg 334  Q
    |||||| |||| |||||||    
T  9961287 tcatttacaagctatcatg 9961305  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 423 - 482
Target Start/End: Original strand, 9961369 - 9961428
Alignment:
Q  423 caatcataaacatccttatcaaacctacatgtttcttctatactcattatcacagtagtt 482  Q
    ||||||||||||||||| |||| |||||||| |||||||||| ||||||||||| |||||    
T  9961369 caatcataaacatccttgtcaaccctacatgcttcttctatattcattatcacaatagtt 9961428  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 9960956 - 9961021
Alignment:
Q  26 gaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccatcataaacttcacca 94  Q
    |||||||||||||||||| ||||||||||||||||||||  ||| ||||   |||||||||||||||||    
T  9960956 gaatgcatgaacatatgattcaccaaatgcatacgttcacacaaaacat---catcataaacttcacca 9961021  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 43938370 - 43938427
Alignment:
Q  25 tgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccatcat 83  Q
    ||||||||||||||||||||||| | ||||||||| ||||| |||||| ||| ||||||    
T  43938370 tgaatgcatgaacatatgactcatc-aatgcatacattcatacaagacctcatcatcat 43938427  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 34898157 - 34898097
Alignment:
Q  26 gaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccatcataaac 87  Q
    |||||||||||||||||||||| | ||||||||||||||| | | | ||||||| |||||||    
T  34898157 gaatgcatgaacatatgactcaac-aatgcatacgttcataccataaatcaccaacataaac 34898097  T

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Target: scaffold0113 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 23801 - 23748
Alignment:
Q  24 gtgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcac 77  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23801 gtgaatgcatgaacatatgactcaccaaatgcatacgttcatacaagacatcac 23748  T

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Target: scaffold0002 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 197 - 337
Target Start/End: Complemental strand, 367450 - 367312
Alignment:
Q  197 catttagcataatttgcattttaaagacgattaagtactttcactaagttaatcaattcaacatatgaatatcaatcactaattcaatcactattcatca 296  Q
    |||||| ||||||||||| || ||||||||||||| | |||||| ||||||||||||||| ||  |||| |||| ||||||| ||| ||  |||||||||    
T  367450 catttatcataatttgcaatt-aaagacgattaagcattttcaccaagttaatcaattcatcaagtgaaaatcattcactaa-tcagtctttattcatca 367353  T
Q  297 tattatcatgaacatacaatcatttgcaagttatcatgtta 337  Q
    ||||||| ||||| ||   ||||||||||| ||||||||||    
T  367352 tattatcttgaacgtaaggtcatttgcaagctatcatgtta 367312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 23299958 - 23299886
Alignment:
Q  20 actcgtgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccatcataaacttcac 92  Q
    |||| |||| ||||||||||||||||||| |||| ||||| ||||| ||| ||||||||||||||||||||||    
T  23299958 actcatgaaagcatgaacatatgactcactaaatccatactttcatacaaaacatcaccatcataaacttcac 23299886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 263 - 370
Target Start/End: Original strand, 3256225 - 3256332
Alignment:
Q  263 gaatatcaatcactaattcaatcactattcatcatattatcatgaacatacaatcatttgcaagttatcatgttataaataatcatttcaccaaagttcg 362  Q
    |||||||||| || |||||| ||| |||||||| |||||||||||  ||| ||||||||||||| ||||||||  ||| | | || ||||||||||||||    
T  3256225 gaatatcaataaccaattcattcattattcatcctattatcatgagtataaaatcatttgcaagctatcatgtcttaattcaacaattcaccaaagttcg 3256324  T
Q  363 tatatttt 370  Q
    | ||||||    
T  3256325 tctatttt 3256332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 25234668 - 25234713
Alignment:
Q  20 actcgtgaatgcatgaacatatgactcaccaaatgcatacgttcat 65  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||||    
T  25234668 actcatgaatgcataaacatatgactcaccaaatacatacgttcat 25234713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 30822097 - 30822140
Alignment:
Q  25 tgaatgcatgaacatatgactcaccaaatgcatacgttcattcaa 69  Q
    |||||||||||||||||||||||   |||||||||||||||||||    
T  30822097 tgaatgcatgaacatatgactca-ataatgcatacgttcattcaa 30822140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 11702 - 11651
Alignment:
Q  25 tgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatca 76  Q
    |||||||||||||||||||||||||||||||||||| |||| || |||||||    
T  11702 tgaatgcatgaacatatgactcaccaaatgcatacgatcatacacgacatca 11651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 483
Target Start/End: Original strand, 19035507 - 19035567
Alignment:
Q  423 caatcataaacatccttatcaaacctacatgtttcttctatactcattatcacagtagtta 483  Q
    ||||||||||||||||  |||| |||||||| |||||||||| ||||||||| ||||||||    
T  19035507 caatcataaacatcctagtcaaccctacatgcttcttctatattcattatcatagtagtta 19035567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 11864044 - 11863977
Alignment:
Q  28 atgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccatcataaacttcaccat 95  Q
    ||||||||| ||||| ||||||||| ||||| |||||| ||||||||||||||||  || ||||||||    
T  11864044 atgcatgaatatatggctcaccaaacgcatatgttcatacaagacatcaccatcaccaatttcaccat 11863977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 25983906 - 25983850
Alignment:
Q  19 gactcgtgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatc 75  Q
    ||||| |||||||||||||||| |||||| ||||||||||  ||||| |||||||||    
T  25983906 gactcatgaatgcatgaacataagactcatcaaatgcatatattcatacaagacatc 25983850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 376
Target Start/End: Complemental strand, 16672551 - 16672465
Alignment:
Q  290 ttcatcatattatcatgaacatacaatcatttgcaagttatcatgttataaataatcatttcaccaaagttcgtatattttctcaaa 376  Q
    ||||||||||||||| ||| | | | |||||||||||||||||  | |||  | |||||||||||||||| ||| ||||||| ||||    
T  16672551 ttcatcatattatcacgaatacaaagtcatttgcaagttatcaaatcatatttcatcatttcaccaaagtccgtctattttcacaaa 16672465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 122982 - 122937
Alignment:
Q  27 aatgcatgaacatatgactcaccaaatgcatacgttcattcaagac 72  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||||    
T  122982 aatgcatgaacatatgactcaccaaacacatacgttcatgcaagac 122937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 133858 - 133813
Alignment:
Q  27 aatgcatgaacatatgactcaccaaatgcatacgttcattcaagac 72  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||||    
T  133858 aatgcatgaacatatgactcaccaaacacatacgttcatgcaagac 133813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 31599 - 31538
Alignment:
Q  25 tgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccatcataaac 87  Q
    |||||||||||||||||||||||   ||||||||||||||| ||| | ||||||| |||||||    
T  31599 tgaatgcatgaacatatgactca-ataatgcatacgttcatacaacaaatcaccaacataaac 31538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 17821336 - 17821276
Alignment:
Q  25 tgaatgcatgaacatatgactcaccaaatgcatacgttcattcaagacatcaccatcataaac 87  Q
    ||||||||||||||||||||||| | ||||||||||||||| ||| | ||||||| |||||||    
T  17821336 tgaatgcatgaacatatgactcaac-aatgcatacgttcatacaaca-atcaccaacataaac 17821276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 389
Target Start/End: Complemental strand, 20151463 - 20151338
Alignment:
Q  264 aatatcaatcactaattcaatcactattcatcatattatcatgaacatacaatcatttgcaagttatcatgttataaataatcatttcaccaaagttcgt 363  Q
    |||||||||||  |||||||| | |||||||| |||||  ||| ||| | ||||| ||| ||||||| ||| | ||| | ||| ||||| |||| |||||    
T  20151463 aatatcaatcatcaattcaataattattcatcgtattagaatgtacacataatcagttgtaagttatgatgctttaattcatcgtttcatcaaatttcgt 20151364  T
Q  364 atattttctcaaagtttgcctatttt 389  Q
     ||||||||||| ||| | |||||||    
T  20151363 ctattttctcaatgttcgtctatttt 20151338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 389
Target Start/End: Original strand, 22181369 - 22181494
Alignment:
Q  264 aatatcaatcactaattcaatcactattcatcatattatcatgaacatacaatcatttgcaagttatcatgttataaataatcatttcaccaaagttcgt 363  Q
    |||||||||||  |||||||| | |||||||| |||||  ||| ||| | ||||| ||| ||||||| ||| | ||| | ||| ||||| |||| |||||    
T  22181369 aatatcaatcatcaattcaataattattcatcgtattagaatgtacacataatcagttgtaagttatgatgctttaattcatcgtttcatcaaatttcgt 22181468  T
Q  364 atattttctcaaagtttgcctatttt 389  Q
     ||||||||||| ||| | |||||||    
T  22181469 ctattttctcaatgttcgtctatttt 22181494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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