View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10440_high_12 (Length: 230)
Name: NF10440_high_12
Description: NF10440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10440_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 52961806 - 52962028
Alignment:
| Q |
1 |
ctctacactttcatacaagacactttctttcatccnnnnnnncattcatattgagatttata----ggctctcatatttcagtta---ctgcatgcacat |
93 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||||||||||| |||||||||||| |
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| T |
52961806 |
ctctacactttcatacaagacactttctttcatccataaaaacatttatattgagatttatatataggctcccatatttcagttattactgcatgcacat |
52961905 |
T |
|
| Q |
94 |
agcacatgcagctaatcattatttataggtagagaaagggaacataatgaatcc----tacatctcatctcacaattcaacatctttatcatttgattcc |
189 |
Q |
| |
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||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
52961906 |
tgcacatgcaactgatcattatttataggtagagaaagggaacataatgaatcctacatacatctcatctcacagttcaacaactttatcatttgattcc |
52962005 |
T |
|
| Q |
190 |
caaattctttcaacccatacgtg |
212 |
Q |
| |
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||||||||||||||| ||||||| |
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| T |
52962006 |
caaattctttcaacctatacgtg |
52962028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 52967767 - 52967985
Alignment:
| Q |
5 |
acactttcatacaagacactttctttcatccnnnnnnncattcatattgagatttata----ggctctcatatttcagtta---ctgcatgcacatagca |
97 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||||||||||| |||||||||||| ||| |
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| T |
52967767 |
acactttcatacaagacactttctttcatccataaaaacatttatattgagatttatatataggctcccatatttcagttattactgcatgcacattgca |
52967866 |
T |
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| Q |
98 |
catgcagctaatcattatttataggtagagaaagggaacataatgaatcc----tacatctcatctcacaattcaacatctttatcatttgattcccaaa |
193 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
52967867 |
catgcaactgatcattatttataggtagagaaagggaacataatgaatcctacatacatctcatctcacagttcaacaactttatcatttgattcccaaa |
52967966 |
T |
|
| Q |
194 |
ttctttcaacccatacgtg |
212 |
Q |
| |
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||||||||||| ||||||| |
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| T |
52967967 |
ttctttcaacctatacgtg |
52967985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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