View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10440_high_2 (Length: 559)
Name: NF10440_high_2
Description: NF10440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10440_high_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Original strand, 6510413 - 6510970
Alignment:
| Q |
1 |
atgacattgtcaataattgactgattttcaacaaatgcagattgctcttgagatatgcatttaggtagtaaagatttgatcctatttgaagta---cctt |
97 |
Q |
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| T |
6510413 |
atgacattgtcaataattgactgattttcaacaaatgcagattgctct----atatgcatttaggtagtaaagatttgatcctatttgaagaagtgcctt |
6510508 |
T |
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| Q |
98 |
ggaaatgccttgtagatgacattgcatagtgaaatgggcctaagatcacgcatagtctccattaatcaaccaagtggtagctacatgatacaactccaca |
197 |
Q |
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| T |
6510509 |
ggaaatgccttgtagatgacattgcatagtgaaatgggcacaagatcacgcatagtctccattaatcaaccaagtggtagctacatgatacaactccaca |
6510608 |
T |
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| Q |
198 |
catacaaatgccaaaatctctaataaaaagtcaggttcagcccatccggtcctggtgctttatcggaattcatagagaaaaattcctttttgaattttgc |
297 |
Q |
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| T |
6510609 |
catacaaatgccaaaatctctaataaaaagtcgggttcagcccatccggtcctggtgctttatcggaattcatatagaaaaattcctttttgaattttgc |
6510708 |
T |
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| Q |
298 |
aatttggaatgggtatataagcataccattatcttcatctgtcattaccggattgatgcattccaactccgtatcaaccatcattcccccttgtcaaata |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |
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| T |
6510709 |
aatttggaatgggtatataagcataccattatcttcatctgtcattaccggattgatgtattccaactccgtatcagccatcattccgccttgtcaaata |
6510808 |
T |
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| Q |
398 |
attcaataaaataattattagctactccgcaccactcttgctgcgacataaccatttccccatcatccctactcaaatttgtgatattgttttgcctctt |
497 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6510809 |
attcaacaaaataattattagctactccgcaccactcttgctgcgacataaccatttccccatcatccctactcaaatttgtgatattgttttgcctctt |
6510908 |
T |
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| Q |
498 |
attggtggtagccatagcatgaaaaaaccgcgagtttgtgccaccatcttttagccaataca |
559 |
Q |
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| T |
6510909 |
attggtggtagccatagcatgaaaaaaccgcaagtttgtgtcaccatcttttagccaataca |
6510970 |
T |
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