View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10440_high_5 (Length: 260)
Name: NF10440_high_5
Description: NF10440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10440_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 36682820 - 36682578
Alignment:
| Q |
1 |
tgtacagtcaggtgcaggacattcccatgcctccaccatctgtacttgatgttaaagtccatgtagctcaagctctcttggatttcttgttgcatgttat |
100 |
Q |
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| T |
36682820 |
tgtacagtcaggtgcaggacattcccaggcctccaccatctgtacttgatgttaaagtccatgtagctcaagctctcttggatttcttgttgcatgttat |
36682721 |
T |
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| Q |
101 |
acatgaggctggtaggggtccaaagtggagtcaccatggtagcatgtagcaggataaatgtcctagttctatttggtatatctcccgaagatactacccc |
200 |
Q |
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| T |
36682720 |
acatgaggctggtaggggtccaaagtggagtcaccatggtagcatgtagcaggataaatgtcctagttctatttggtatatctcccgaagatactacccc |
36682621 |
T |
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| Q |
201 |
tatcgagagagaaccccatgggtcgacgaatcaggaagtaatt |
243 |
Q |
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| T |
36682620 |
tatcgagagagaaccccatgggtcgacgaatcaggaagtaatt |
36682578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 36693787 - 36693545
Alignment:
| Q |
1 |
tgtacagtcaggtgcaggacattcccatgcctccaccatctgtacttgatgttaaagtccatgtagctcaagctctcttggatttcttgttgcatgttat |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36693787 |
tgtacagtcaggtgcaggacattcccaggcctccaccatctgtacttgatgttaaagtccatgtagctcaagctctcttggatttcttgttgcatgttat |
36693688 |
T |
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| Q |
101 |
acatgaggctggtaggggtccaaagtggagtcaccatggtagcatgtagcaggataaatgtcctagttctatttggtatatctcccgaagatactacccc |
200 |
Q |
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| T |
36693687 |
acatgaggctggtaggggtccaaagtggagtcaccatggtagcatgtagcaggataaatgtcctagttctatttggtatatctcccgaagatactacccc |
36693588 |
T |
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| Q |
201 |
tatcgagagagaaccccatgggtcgacgaatcaggaagtaatt |
243 |
Q |
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| T |
36693587 |
tatcgagagagaaccccatgggtcgacgaatcaggaagtaatt |
36693545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 436029 - 435788
Alignment:
| Q |
2 |
gtacagtcaggtgcaggacattcccatgcctccaccatctgtacttgatgttaaagtccatgtagctcaagctctcttggatttcttgttgcatgttata |
101 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
436029 |
gtacagtcaggtgcaggacattcccaggcctccaccatctgtacttgatgttaaagtccatgtagctcaagctctcttggatttcttgttgcatgttata |
435930 |
T |
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| Q |
102 |
catgaggctggtaggggtccaaagtggagtcaccatggtagcatgtagcaggataaatgtcctagttctatttggtatatctcccgaagatactacccct |
201 |
Q |
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| T |
435929 |
cttgaggctggtaggggtccaaagtggagtcaccatggtagcatgtagcaggataaatgtcctagttctatttggtatatctcccgaagatactacccct |
435830 |
T |
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| Q |
202 |
atcgagagagaaccccatgggtcgacgaatcaggaagtaatt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
435829 |
atcgagagagaaccccatgggtcgacgaatcaggaagtaatt |
435788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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