View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10440_high_7 (Length: 251)
Name: NF10440_high_7
Description: NF10440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10440_high_7 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 30877240 - 30877007
Alignment:
| Q |
18 |
tcacagctctatgagcaagccgttttaaaatattcttaatcattatatgaactttgaaattgaaactttatgaaaataaaatgatgatagaattaacaat |
117 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30877240 |
tcacaactctatgagcaagccattttaaaatattcttaatcattatatgaactttgaaattgaaactttatgaaaataaaatgatgatagaattaacaat |
30877141 |
T |
|
| Q |
118 |
tgttctattagttttagattcgcccaaaatctttattttaatatccgatgattaaaagttgatagaaatgattctaaactaagctggctgaaatgatgct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30877140 |
tgttctattagttttagattcgcccaaaatctttattttaatacccgatgattaaaagttgatagaaatgattctaaactaagctggctgaaatgatgct |
30877041 |
T |
|
| Q |
218 |
gaaagtcgtgaagagaggtgatcatatattactt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
30877040 |
gaaagtcgtgaagagaggtgatcatatattactt |
30877007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University