View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10440_high_8 (Length: 250)

Name: NF10440_high_8
Description: NF10440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10440_high_8
NF10440_high_8
[»] chr1 (3 HSPs)
chr1 (159-244)||(1133997-1134082)
chr1 (57-109)||(1133887-1133939)
chr1 (1-39)||(1133828-1133866)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 1133997 - 1134082
Alignment:
Q  159 caaaagagtatagtgcacatcatcatgccttcttcatcactaaacaaagtccctgatgacgtggccttcacaagttcctttgcttc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1133997 caaaagagtatagtgcacatcatcatgccttcttcatcactaaacaaagtccctgatgacgtggccttcacaagttcctttgcttc 1134082  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 1133887 - 1133939
Alignment:
Q  57 ttaagtgaagatcctcataaagtagtgcgttcccacgagttcaaaagacaaca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1133887 ttaagtgaagatcctcataaagtagtgcgttcccacgagttcaaaagacaaca 1133939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1133828 - 1133866
Alignment:
Q  1 ttaagtaatatgtcaattattgtgtcccaaagtaaaaga 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1133828 ttaagtaatatgtcaattattgtgtcccaaagtaaaaga 1133866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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