View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10440_low_1 (Length: 599)
Name: NF10440_low_1
Description: NF10440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10440_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 583
Target Start/End: Original strand, 31078349 - 31078929
Alignment:
| Q |
18 |
agtttcgaccggagaggtggttgagtcaagatgaggatgggaagtggagttttattgggatggatccttatagttatgcggtttttcaagctgggccgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31078349 |
agtttcgaccggagaggtggttgagtcaagatgaggatgggaagtggagttttattgggatggatccttatagttatgcggtttttcaagctgggccgag |
31078448 |
T |
|
| Q |
118 |
ggtgtgtttaggaaaggaaatggcgttcttgcagatgaagagggtggttgcagggatcatgaggcagtttagggtggttcctgcgatggataaaggggtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31078449 |
ggtgtgtttaggaaaggaaatggcgttcttgcagatgaagagggtggttgcagggatcatgaggcagtttagggtggttcctgcaatggataaaggggtt |
31078548 |
T |
|
| Q |
218 |
gagccggagtacattgcacaccttacctcattgatgaagggtggcttcttggtaagaattgagaagcgaagccacaaagatcaataaaaattaataaggt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31078549 |
gagccggagtacattgcacaccttacctcattgatgaaaggtggcttctcggtaagaattgagaagcgaagccacaaagatcaataaaaattaataaggt |
31078648 |
T |
|
| Q |
318 |
catgttaactagtatccctgagatattagttaagaaagttaaaagtgaaaaaatttcattgaaaaccacacattcttgattttaaaaaattacatataca |
417 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||| ||| ||||||| |
|
|
| T |
31078649 |
catgttaactagtattgctgatatattagttaagaaagttaaaagtgaaaaaatttcattaaaaaccacatattcttaattttaaaaagttaaatataca |
31078748 |
T |
|
| Q |
418 |
acttttccacattttacattacaatg-------------tttcttagcatttctcataaaagtaaatgttgcataaatatgttccaaaagttccaacgtc |
504 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31078749 |
acttttccacattttacattacaatgtttctatattagttttcttagcatttctcataaaagtaaatgttgcataaatatgttccaaaggttccaacgtc |
31078848 |
T |
|
| Q |
505 |
aaaacatactcattatcttgtatagaatatgt--ttggtatcacaccaaatttgccaaaatcataatattcatcgtgatgt |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31078849 |
aaaacatactcattatcttgtatagaatatgtaattggtatcacaccaaatttgccaaaatcataatattcatcgtgatgt |
31078929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 31127667 - 31127934
Alignment:
| Q |
18 |
agtttcgaccggagaggtggttgagtcaagatgaggatgggaagtggagttttattgggatggatccttatagttatgcggtttttcaagctgggccgag |
117 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
31127667 |
agtttcgacctgagagatggttgagtcaagttgatgatggaaagtggagctttattgggatggatccttatagttatgcggtttttcaggctgggccaag |
31127766 |
T |
|
| Q |
118 |
ggtgtgtttaggaaaggaaatggcgttcttgcagatgaagagggtggttgcagggatcatgaggcagtttagggtggttcctgcgatggataaaggggtt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31127767 |
ggtgtgtttaggaaaggaaatggcgttcttgcagatgaaaagggtggttgccgggatcatgaggcagtttagggtggttcctgcaatggataaaggggtt |
31127866 |
T |
|
| Q |
218 |
gagccggagtacattgcacaccttacctcattgatgaagggtggcttcttggtaagaattgagaagcg |
285 |
Q |
| |
|
|||||||||| | |||||||||||| || | ||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
31127867 |
gagccggagttcgctgcacaccttacttcgataatgaaaggtggcttcctggtaaagattgagaagcg |
31127934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 31132375 - 31132579
Alignment:
| Q |
18 |
agtttcgaccggagaggtggttgagtcaagatgaggatgggaagtggagttttattgggatggatccttatagttatgcggtttttcaagctgggccgag |
117 |
Q |
| |
|
||||| |||| |||||||||||||||| || ||| ||||| || ||||| ||| |||||||||||||||||| |||| || ||||||||||||||||||| |
|
|
| T |
31132375 |
agttttgacctgagaggtggttgagtcgagctgacgatggaaaatggagctttgttgggatggatccttatacttatccgatttttcaagctgggccgag |
31132474 |
T |
|
| Q |
118 |
ggtgtgtttaggaaaggaaatggcgttcttgcagatgaag---agggtggttgcagggatcatgaggcagtttagggtggttcctgcgatggataaaggg |
214 |
Q |
| |
|
|||||||||||| || |||||||||||||| | |||||| ||| |||||| || || || ||| |||||||| || |||| ||||||||| ||||| |
|
|
| T |
31132475 |
ggtgtgtttagggaaagaaatggcgttcttagaaatgaagatcaggttggttgttggcattataagggagtttaggttgcttccagcgatggatgaaggg |
31132574 |
T |
|
| Q |
215 |
gttga |
219 |
Q |
| |
|
||||| |
|
|
| T |
31132575 |
gttga |
31132579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 406
Target Start/End: Complemental strand, 24123380 - 24123320
Alignment:
| Q |
346 |
gttaagaaagttaaaagtgaaaaaatttcattgaaaaccacacattcttgattttaaaaaa |
406 |
Q |
| |
|
||||| |||||||||||| |||| ||| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
24123380 |
gttaaaaaagttaaaagtagaaaattttaattgaaaacaacaaattcttgattttaaaaaa |
24123320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University