View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10440_low_11 (Length: 250)
Name: NF10440_low_11
Description: NF10440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10440_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 1133997 - 1134082
Alignment:
| Q |
159 |
caaaagagtatagtgcacatcatcatgccttcttcatcactaaacaaagtccctgatgacgtggccttcacaagttcctttgcttc |
244 |
Q |
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| T |
1133997 |
caaaagagtatagtgcacatcatcatgccttcttcatcactaaacaaagtccctgatgacgtggccttcacaagttcctttgcttc |
1134082 |
T |
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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 1133887 - 1133939
Alignment:
| Q |
57 |
ttaagtgaagatcctcataaagtagtgcgttcccacgagttcaaaagacaaca |
109 |
Q |
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| T |
1133887 |
ttaagtgaagatcctcataaagtagtgcgttcccacgagttcaaaagacaaca |
1133939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1133828 - 1133866
Alignment:
| Q |
1 |
ttaagtaatatgtcaattattgtgtcccaaagtaaaaga |
39 |
Q |
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| T |
1133828 |
ttaagtaatatgtcaattattgtgtcccaaagtaaaaga |
1133866 |
T |
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