View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10440_low_12 (Length: 245)

Name: NF10440_low_12
Description: NF10440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10440_low_12
NF10440_low_12
[»] chr4 (14 HSPs)
chr4 (1-240)||(42312490-42312727)
chr4 (146-233)||(18838724-18838811)
chr4 (175-236)||(16572253-16572314)
chr4 (169-233)||(33721704-33721768)
chr4 (154-230)||(44884442-44884520)
chr4 (168-233)||(54863918-54863983)
chr4 (146-233)||(25376933-25377020)
chr4 (191-233)||(31707438-31707480)
chr4 (175-231)||(21128097-21128153)
chr4 (146-238)||(34319524-34319616)
chr4 (172-236)||(56093589-56093653)
chr4 (195-238)||(38216015-38216058)
chr4 (180-233)||(40414165-40414215)
chr4 (169-230)||(47231663-47231724)
[»] chr3 (22 HSPs)
chr3 (129-233)||(32211878-32211982)
chr3 (146-236)||(35455280-35455370)
chr3 (146-238)||(8825442-8825532)
chr3 (1-111)||(51565655-51565763)
chr3 (167-236)||(45261357-45261426)
chr3 (129-238)||(46918547-46918655)
chr3 (131-233)||(43320220-43320322)
chr3 (174-238)||(47860600-47860664)
chr3 (146-236)||(17003661-17003752)
chr3 (172-233)||(43105947-43106007)
chr3 (168-236)||(55452423-55452494)
chr3 (176-236)||(25295138-25295198)
chr3 (138-223)||(52596725-52596812)
chr3 (179-230)||(40345022-40345073)
chr3 (129-230)||(27721333-27721433)
chr3 (174-227)||(50452386-50452439)
chr3 (136-232)||(38854576-38854671)
chr3 (139-201)||(2564416-2564478)
chr3 (179-233)||(49983561-49983615)
chr3 (167-236)||(48271833-48271902)
chr3 (175-215)||(18085656-18085695)
chr3 (178-230)||(28695546-28695598)
[»] chr8 (14 HSPs)
chr8 (128-230)||(36054770-36054872)
chr8 (140-226)||(8251202-8251288)
chr8 (168-239)||(16890354-16890425)
chr8 (175-233)||(40694233-40694291)
chr8 (129-233)||(38209608-38209710)
chr8 (175-239)||(31658854-31658918)
chr8 (170-236)||(1445349-1445416)
chr8 (169-236)||(30112511-30112578)
chr8 (175-238)||(40696640-40696703)
chr8 (179-224)||(30654260-30654305)
chr8 (176-229)||(2520224-2520277)
chr8 (181-233)||(2152328-2152379)
chr8 (168-222)||(35431579-35431633)
chr8 (173-223)||(43594503-43594553)
[»] chr2 (17 HSPs)
chr2 (129-233)||(3269312-3269416)
chr2 (129-233)||(3269871-3269975)
chr2 (136-233)||(3268760-3268857)
chr2 (129-233)||(38496428-38496532)
chr2 (129-238)||(19285835-19285944)
chr2 (155-235)||(3711925-3712004)
chr2 (173-240)||(44883245-44883312)
chr2 (167-236)||(38214106-38214175)
chr2 (130-230)||(40442674-40442774)
chr2 (167-230)||(40503868-40503931)
chr2 (178-236)||(9045642-9045699)
chr2 (176-230)||(39063686-39063740)
chr2 (168-233)||(16781256-16781320)
chr2 (175-233)||(7011096-7011154)
chr2 (185-239)||(16268375-16268429)
chr2 (193-234)||(28650282-28650323)
chr2 (146-225)||(21794827-21794907)
[»] chr1 (22 HSPs)
chr1 (136-233)||(17971451-17971548)
chr1 (129-236)||(36437286-36437392)
chr1 (146-233)||(27442460-27442547)
chr1 (178-233)||(39150269-39150324)
chr1 (158-230)||(28165217-28165289)
chr1 (168-230)||(31181144-31181206)
chr1 (169-231)||(34702197-34702259)
chr1 (178-230)||(17988375-17988427)
chr1 (177-223)||(52336954-52337000)
chr1 (175-236)||(9851898-9851959)
chr1 (129-230)||(42745499-42745600)
chr1 (1-108)||(47977075-47977181)
chr1 (175-238)||(28469935-28469998)
chr1 (170-225)||(31003677-31003732)
chr1 (128-198)||(2619805-2619875)
chr1 (175-236)||(46443703-46443764)
chr1 (175-223)||(11435554-11435602)
chr1 (170-229)||(31152431-31152491)
chr1 (129-233)||(32715648-32715751)
chr1 (166-236)||(948228-948298)
chr1 (146-215)||(24547398-24547467)
chr1 (128-230)||(42454964-42455067)
[»] chr5 (13 HSPs)
chr5 (128-239)||(18704953-18705064)
chr5 (139-236)||(6688752-6688849)
chr5 (176-236)||(3629295-3629355)
chr5 (175-238)||(10656492-10656555)
chr5 (175-238)||(27193012-27193075)
chr5 (173-235)||(73565-73627)
chr5 (179-236)||(19296243-19296300)
chr5 (177-235)||(3257296-3257354)
chr5 (177-236)||(10705027-10705085)
chr5 (175-238)||(43442044-43442106)
chr5 (171-230)||(4449434-4449495)
chr5 (146-228)||(11691151-11691233)
chr5 (168-232)||(35931539-35931603)
[»] scaffold0836 (1 HSPs)
scaffold0836 (158-236)||(3006-3084)
[»] chr6 (8 HSPs)
chr6 (136-230)||(180302-180396)
chr6 (129-233)||(19780186-19780290)
chr6 (146-230)||(606709-606793)
chr6 (175-235)||(1856752-1856812)
chr6 (166-236)||(3611554-3611623)
chr6 (177-230)||(28363787-28363840)
chr6 (168-203)||(7926799-7926834)
chr6 (185-230)||(9425503-9425548)
[»] chr7 (21 HSPs)
chr7 (138-230)||(41508064-41508156)
chr7 (129-236)||(12506663-12506770)
chr7 (172-239)||(37048573-37048640)
chr7 (179-233)||(46341502-46341556)
chr7 (129-236)||(12485231-12485338)
chr7 (179-233)||(2195810-2195864)
chr7 (185-238)||(6549153-6549206)
chr7 (177-238)||(9183321-9183382)
chr7 (168-233)||(46101301-46101366)
chr7 (146-201)||(6549222-6549277)
chr7 (175-236)||(20949074-20949135)
chr7 (172-226)||(17757507-17757561)
chr7 (170-230)||(7307436-7307496)
chr7 (171-219)||(40016980-40017028)
chr7 (129-233)||(42935409-42935513)
chr7 (166-233)||(943125-943192)
chr7 (175-230)||(14650191-14650246)
chr7 (180-238)||(46572369-46572428)
chr7 (167-233)||(14568350-14568416)
chr7 (167-205)||(17205122-17205160)
chr7 (175-223)||(508464-508512)
[»] scaffold0024 (1 HSPs)
scaffold0024 (129-226)||(154295-154392)
[»] scaffold0088 (1 HSPs)
scaffold0088 (175-236)||(51274-51335)
[»] scaffold1809 (1 HSPs)
scaffold1809 (168-236)||(583-651)
[»] scaffold0015 (1 HSPs)
scaffold0015 (167-233)||(38921-38987)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42312727 - 42312490
Alignment:
Q  1 ttctatcatgaaaaatctcattttggcattggagcatatggcttatatagtccacgtattgattttgcagttcgggatgctgattcaatccctctttgac 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42312727 ttctatcatgaaaaatctcattttggcattggagcatatgacttatatagtccacgtattgattttgcagttcgggatgctgattcaatacctctttgac 42312628  T
Q  101 aaatttccaaatatagaagatacttcctcctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaat-atcacaactt 199  Q
    |||||||||||| |||||||||||||   |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  42312627 aaatttccaaatgtagaagatacttc---ctccgatcttatatacaagaaaatattcaaaaaattatttggtcttatttataaaaaaataatcacaactt 42312531  T
Q  200 ttaaggtatagttattgcttaaaagacttttctatcctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42312530 ttaaggtatagttattgcttaaaagacttttctatcctttg 42312490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 18838724 - 18838811
Alignment:
Q  146 aagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    |||||||| || |||||||| ||||||  ||||||| ||||||| ||| ||||||||||||||| |||||| ||||||||||||||||    
T  18838724 aagaaaatttttaaaaaactttttggttctatttatgagaaaatgtcataacttttaaggtataattattgtttaaaagacttttcta 18838811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 16572253 - 16572314
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||| ||| |||| |||||    
T  16572253 tatttataagaaaatgtcacaacttttaaggtgtagttattgcttaacagaattttttatcc 16572314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 33721768 - 33721704
Alignment:
Q  169 tggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    ||||| ||||||||||||||| |||||| |||||| || ||||||||| ||||||||||||||||    
T  33721768 tggtcctatttataagaaaatgtcacaatttttaatgtgtagttattgtttaaaagacttttcta 33721704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 44884520 - 44884442
Alignment:
Q  154 attcaaaaaactatttggtcttatttataagaaaatatcacaac--ttttaaggtatagttattgcttaaaagactttt 230  Q
    |||||||||| | ||||||| ||| ||||||||||| |||||||  ||||||||| ||||||||| |||||||||||||    
T  44884520 attcaaaaaagtttttggtcctatatataagaaaatgtcacaacttttttaaggtgtagttattgtttaaaagactttt 44884442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 54863918 - 54863983
Alignment:
Q  168 ttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    |||||| ||||||||||||||  ||||||||||||||||| | |||||| ||||||| ||||||||    
T  54863918 ttggtcctatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaaggcttttcta 54863983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 25377020 - 25376933
Alignment:
Q  146 aagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    |||||||| || ||||||   ||| |||||||||| |||||||  |||||  |||||||||||| |||||| ||||||||||||||||    
T  25377020 aagaaaattttaaaaaaaaattttcgtcttatttacaagaaaaagtcacagattttaaggtataattattgtttaaaagacttttcta 25376933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 31707480 - 31707438
Alignment:
Q  191 tcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  31707480 tcacaacttttaaggtgtagttattgcttagaagacttttcta 31707438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 21128097 - 21128153
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttc 231  Q
    ||||||||||||||| ||| ||||||||| ||||| |||||  ||||||||||||||    
T  21128097 tatttataagaaaatgtcataacttttaatgtatatttattttttaaaagacttttc 21128153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 34319524 - 34319616
Alignment:
Q  146 aagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcctt 238  Q
    |||||||| |||||||||  | |||||| ||||||||||||||| |||||| |||||| ||   ||||||| ||||||  |||||||| ||||    
T  34319524 aagaaaattttcaaaaaaaaacttggtcctatttataagaaaatgtcacaatttttaaagtgcggttattgtttaaaaagcttttctaccctt 34319616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 56093589 - 56093653
Alignment:
Q  172 tcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    |||||| ||||| ||||||||| |||||||||||| || |||||  ||||||||||||| |||||    
T  56093589 tcttatctataaaaaaatatcataacttttaaggtgtaattattatttaaaagacttttttatcc 56093653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 38216015 - 38216058
Alignment:
Q  195 aacttttaaggtatagttattgcttaaaagacttttctatcctt 238  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||||    
T  38216015 aacttttaaggtatatttattgcataaaagatttttctatcctt 38216058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 40414215 - 40414165
Alignment:
Q  180 ataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    ||||||||||||   |||||||||||| ||||||||| ||||||||||||||||    
T  40414215 ataagaaaatat---aacttttaaggtgtagttattgtttaaaagacttttcta 40414165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 47231724 - 47231663
Alignment:
Q  169 tggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    |||| |||||||||||||||| |||  ||||||||| |||| |||||| |||||||| ||||    
T  47231724 tggttttatttataagaaaatgtcaatacttttaagatatatttattgtttaaaagattttt 47231663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 129 - 233
Target Start/End: Complemental strand, 32211982 - 32211878
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactt 228  Q
    |||||| ||||||||| |||||||| ||||||||| |  |||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||    
T  32211982 cctccggtcctatatataagaaaattttcaaaaaaattgttggtcttatttataagaaaatttcacaacttttaaggtgtagttattgtttaaaagactt 32211883  T
Q  229 ttcta 233  Q
    |||||    
T  32211882 ttcta 32211878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 35455280 - 35455370
Alignment:
Q  146 aagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    |||||||| |||||||||  | |||||||||||||||||||||| |||||||||||||||| || |||||||||||| |||||||||||||    
T  35455280 aagaaaattttcaaaaaaaaaattggtcttatttataagaaaatgtcacaacttttaaggtgtaattattgcttaaatgacttttctatcc 35455370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 8825532 - 8825442
Alignment:
Q  146 aagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcctt 238  Q
    |||||||| |||||||||  ||| |||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  8825532 aagaaaattttcaaaaaaaaatt-ggtcctatttataagaaaatgtcacaa-ttttaaggtgtagttattgcttaaaagacttttctatcctt 8825442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 51565655 - 51565763
Alignment:
Q  1 ttctatcatgaaaaatctcattttggcattggagcatatggcttatatagtccacgtattgattttgcagttcgggatgctgattcaatccctctttgac 100  Q
    |||||| ||||| ||||||||||||||| || |||||||| |||| |  ||||| | ||||||||||||||||||||||||||||  || |||||||||     
T  51565655 ttctattatgaagaatctcattttggcactgtagcatatgtcttaaa--gtccatgcattgattttgcagttcgggatgctgattgcatacctctttgag 51565752  T
Q  101 aaatttccaaa 111  Q
    |||||||||||    
T  51565753 aaatttccaaa 51565763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 45261357 - 45261426
Alignment:
Q  167 tttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    ||||||| ||||||||||||||| |||||||||||||| | ||||||||||||||| |||||||||||||    
T  45261357 tttggtcctatttataagaaaatgtcacaacttttaagctgtagttattgcttaaatgacttttctatcc 45261426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 238
Target Start/End: Complemental strand, 46918655 - 46918547
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactt 228  Q
    |||| ||||||  ||| |||||||| || ||||||   ||||||| ||||||||||||||| |||||| |||||||| ||||||||||||||||||||||    
T  46918655 cctcagatccttaatataagaaaatttttaaaaaaagttttggtcctatttataagaaaatgtcacaatttttaagg-atagttattgcttaaaagactt 46918557  T
Q  229 ttctatcctt 238  Q
    || |||||||    
T  46918556 ttttatcctt 46918547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 43320322 - 43320220
Alignment:
Q  131 tccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    ||||||| ||| || || ||||| |||||||||   ||||| | ||||||||||||||| |||||||||||||||| | ||||||| |||||||||||||    
T  43320322 tccgatcttatgtataataaaattttcaaaaaaaagtttggacctatttataagaaaatgtcacaacttttaaggtgtggttattgtttaaaagactttt 43320223  T
Q  231 cta 233  Q
    |||    
T  43320222 cta 43320220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 47860600 - 47860664
Alignment:
Q  174 ttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcctt 238  Q
    |||||||||||||||| ||||| ||||||||||||||||||| |||||||||| ||| |||||||    
T  47860600 ttatttataagaaaatgtcacatcttttaaggtatagttattacttaaaagacatttttatcctt 47860664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 17003752 - 17003661
Alignment:
Q  146 aagaaaatattcaaaaaactatttggtcttatttataagaaaa-tatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    |||||||| |||||||||  || ||||| ||||||||| |||| | |||||||||||||||| ||||||||||||||| ||||||| |||||    
T  17003752 aagaaaattttcaaaaaaaaatctggtcctatttataaaaaaaatgtcacaacttttaaggtgtagttattgcttaaatgacttttttatcc 17003661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 43106007 - 43105947
Alignment:
Q  172 tcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    |||||||||||||||||  |||||||||||||||| || |||||| ||||||||||||||||    
T  43106007 tcttatttataagaaaaagtcacaacttttaaggt-tatttattgtttaaaagacttttcta 43105947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 55452423 - 55452494
Alignment:
Q  168 ttggtcttatttataagaaaatatcacaacttttaaggtatag---ttattgcttaaaagacttttctatcc 236  Q
    |||||||||||||||||||||| |||||||||||||  | |||   ||||||||||||||| ||||||||||    
T  55452423 ttggtcttatttataagaaaatgtcacaacttttaaaatgtagtttttattgcttaaaagatttttctatcc 55452494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 25295198 - 25295138
Alignment:
Q  176 atttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    |||||||||||||| | |||||||||||||| || |||||| ||||||||||||| |||||    
T  25295198 atttataagaaaatgttacaacttttaaggtgtaattattgtttaaaagacttttttatcc 25295138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 52596812 - 52596725
Alignment:
Q  138 ctatatacaagaaaatattcaaaaaactatttggtcttattt--ataagaaaatatcacaacttttaaggtatagttattgcttaaaa 223  Q
    ||||||| |||||||| || ||| || |||||||||||||||  |||| ||||||| ||||||||||||||  ||||||| |||||||    
T  52596812 ctatatataagaaaattttaaaagaattatttggtcttatttttataaaaaaatattacaacttttaaggtgcagttattacttaaaa 52596725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 40345073 - 40345022
Alignment:
Q  179 tataagaaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    ||||||||||| |||||||||||||||| |||| ||||||||| ||||||||    
T  40345073 tataagaaaatgtcacaacttttaaggtgtagtcattgcttaagagactttt 40345022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 27721333 - 27721433
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactt 228  Q
    |||||| |||| |||| |||||||  ||||||||| | ||| ||| ||||||||||||||| |||||| |||| | || | ||||||| |||||||||||    
T  27721333 cctccggtcctttatataagaaaaagttcaaaaaaattttttgtcctatttataagaaaatgtcacaa-tttttatgtgttgttattgtttaaaagactt 27721431  T
Q  229 tt 230  Q
    ||    
T  27721432 tt 27721433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 50452439 - 50452386
Alignment:
Q  174 ttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagact 227  Q
    |||||||||||||||||||| || ||||||||||||  ||||| ||||||||||    
T  50452439 ttatttataagaaaatatcataatttttaaggtataactattgtttaaaagact 50452386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 232
Target Start/End: Original strand, 38854576 - 38854671
Alignment:
Q  136 tcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttct 232  Q
    |||||| || |||| ||| |||||| || ||||||||  ||||||||||||||  ||||||||||||| ||||| |||||  ||| |||||||||||    
T  38854576 tcctatttataagacaattttcaaacaaatatttggttctatttataagaaaaattcacaacttttaaagtatatttatt-tttagaagacttttct 38854671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 2564416 - 2564478
Alignment:
Q  139 tatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaactttt 201  Q
    |||||| |||||||| ||||||| | | ||||||| || ||||||||||||||||||| ||||    
T  2564416 tatatataagaaaattttcaaaatattttttggtcctaattataagaaaatatcacaaatttt 2564478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 49983561 - 49983615
Alignment:
Q  179 tataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    ||||||||||  |||||||||||||| || | |||||| ||||||||||||||||    
T  49983561 tataagaaaaagtcacaacttttaagatacatttattgtttaaaagacttttcta 49983615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 48271902 - 48271833
Alignment:
Q  167 tttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    ||||||| ||||||||||||||| ||||||||| |||  |  | |||||||||||||||| || ||||||    
T  48271902 tttggtcatatttataagaaaatgtcacaacttctaaaatgaaattattgcttaaaagaccttcctatcc 48271833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 18085695 - 18085656
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttatt 215  Q
    |||||||||||||||||||||| ||||||||| ||||||||    
T  18085695 tatttataagaaaatatcacaa-ttttaaggtgtagttatt 18085656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 28695546 - 28695598
Alignment:
Q  178 ttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    ||||||||||||||||||| |||||| || ||||||||  || ||||||||||    
T  28695546 ttataagaaaatatcacaaattttaacgtgtagttattattttaaagactttt 28695598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 36054770 - 36054872
Alignment:
Q  128 tcctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagact 227  Q
    ||||||||||||||||| |||||||| ||||||| | | ||||||| ||||||||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  36054770 tcctccgatcctatatataagaaaattttcaaaataatttttggtcctatttataagaaaatgtcacaacttttaaggtatatttattgtttaaaagact 36054869  T
Q  228 ttt 230  Q
    |||    
T  36054870 ttt 36054872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 8251202 - 8251288
Alignment:
Q  140 atatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagac 226  Q
    ||||| |||||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  8251202 atatataagaaaattttaaaaaaaatatttggtcctatttataagaaaatatcacaacttttaaggtgtaattattgcttaaaagac 8251288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 16890425 - 16890354
Alignment:
Q  168 ttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatccttt 239  Q
    |||||| |||||||| |||||||||||||||||||||||||||||| || || ||||||||||||| |||||    
T  16890425 ttggtcctatttatatgaaaatatcacaacttttaaggtatagttagtgtttcaaagacttttctacccttt 16890354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 40694233 - 40694291
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||    
T  40694233 tatttataagaaaatatcacaactttttaggtgtaattattgcttaaaagacttttcta 40694291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 233
Target Start/End: Complemental strand, 38209710 - 38209608
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactt 228  Q
    |||||| ||||||||| |||||||| |  ||||||  |||||||| ||||||||||||||  ||||||||||||||||| | |||||| |||||||||||    
T  38209710 cctccggtcctatatataagaaaatttaaaaaaaa--atttggtcatatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaagactt 38209613  T
Q  229 ttcta 233  Q
     ||||    
T  38209612 ctcta 38209608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 31658854 - 31658918
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatccttt 239  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| || |||||    
T  31658854 tatttataagaaaatatcacaacttttaagatgtagttattgtttaaaagacttttttaaccttt 31658918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 1445349 - 1445416
Alignment:
Q  170 ggtcttatttataagaaaatatcacaacttttaaggtat-agttattgcttaaaagacttttctatcc 236  Q
    |||| ||||||||||||||| |||||||||||||||| | |||||||||||||| |||||||||||||    
T  1445349 ggtcctatttataagaaaatgtcacaacttttaaggtgtaagttattgcttaaatgacttttctatcc 1445416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 30112578 - 30112511
Alignment:
Q  169 tggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    ||||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||| |||| |||||    
T  30112578 tggtcctatttataagaaaatgtcacaaattttaaggtgtagttattgcttaaaagatttttttatcc 30112511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 40696703 - 40696640
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcctt 238  Q
    ||||||||||||||||||||||||||| || | || ||||| ||||||||||||||||| ||||    
T  40696703 tatttataagaaaatatcacaactttttagatgtaattattccttaaaagacttttctaccctt 40696640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 30654305 - 30654260
Alignment:
Q  179 tataagaaaatatcacaacttttaaggtatagttattgcttaaaag 224  Q
    ||||||||||||||||||||||||| || |||||||||||||||||    
T  30654305 tataagaaaatatcacaacttttaaagtgtagttattgcttaaaag 30654260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 2520277 - 2520224
Alignment:
Q  176 atttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttt 229  Q
    |||||||||||||| |||||| ||||||| | |||||||||||||| |||||||    
T  2520277 atttataagaaaatgtcacaaattttaagatgtagttattgcttaagagacttt 2520224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 2152328 - 2152379
Alignment:
Q  181 taagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    |||||||||||||||| ||||||||| | |||||| |||||||||||||||||    
T  2152328 taagaaaatatcacaatttttaaggtgt-gttattacttaaaagacttttcta 2152379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 35431579 - 35431633
Alignment:
Q  168 ttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaa 222  Q
    |||||| ||||||||||||||| |||||||||||||  |||||| |||| |||||    
T  35431579 ttggtcctatttataagaaaatgtcacaacttttaaattatagtcattgtttaaa 35431633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 43594553 - 43594503
Alignment:
Q  173 cttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaa 223  Q
    ||||||||||||||||| ||||| ||||| | ||||||||||||| |||||    
T  43594553 cttatttataagaaaatgtcacatctttttaagtatagttattgcataaaa 43594503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 3269312 - 3269416
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactt 228  Q
    |||||| ||||||||| |||||||| ||||||||| | |||||||  | ||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  3269312 cctccgttcctatatataagaaaattttcaaaaaaatctttggtccaaattataagaaaatatcacaacttttaaggtgtagttattgcctaaaagactt 3269411  T
Q  229 ttcta 233  Q
    |||||    
T  3269412 ttcta 3269416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 3269871 - 3269975
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactt 228  Q
    |||||| ||||||||| |||||||| ||||||||| | |||||||  | ||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  3269871 cctccgttcctatatataagaaaattttcaaaaaaatctttggtccaaattataagaaaatatcacaacttttaaggtgtagttattgcctaaaagactt 3269970  T
Q  229 ttcta 233  Q
    |||||    
T  3269971 ttcta 3269975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 3268760 - 3268857
Alignment:
Q  136 tcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    |||||| || |||||||| ||||||||| | |||||||  | ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  3268760 tcctatgtataagaaaattttcaaaaaaatctttggtccaaattataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttcta 3268857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 38496428 - 38496532
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactat-ttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagact 227  Q
    |||||||||||||||| |||||||| ||||||||| ||| || ||| ||||||||||||||| ||| || ||||||||||||||||||| |||||||||     
T  38496428 cctccgatcctatatataagaaaattttcaaaaaa-tatgttagtcctatttataagaaaatgtcagaatttttaaggtatagttattgtttaaaagacc 38496526  T
Q  228 tttcta 233  Q
    ||||||    
T  38496527 tttcta 38496532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 238
Target Start/End: Original strand, 19285835 - 19285944
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactt 228  Q
    |||||||||||   || |||||||| |||||||||  |||||||| |||||||||| || | |||||| ||||||||| |||||||||| ||||||||||    
T  19285835 cctccgatccttattataagaaaattttcaaaaaaaaatttggtcctatttataagtaattgtcacaagttttaaggtgtagttattgcataaaagactt 19285934  T
Q  229 ttctatcctt 238  Q
    || |||||||    
T  19285935 ttatatcctt 19285944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 3712004 - 3711925
Alignment:
Q  155 ttcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatc 235  Q
    |||||||||  |||||||  ||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||    
T  3712004 ttcaaaaaaaaatttggttctatttataagaaaatgtcacaacttttaagg-atagttattgtttaaaagacttttttatc 3711925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 44883312 - 44883245
Alignment:
Q  173 cttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcctttg 240  Q
    |||||||||||||||||||||||| |||||||||||| |||||| | |||  | ||||||||||||||    
T  44883312 cttatttataagaaaatatcacaatttttaaggtatatttattgttaaaataatttttctatcctttg 44883245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 38214106 - 38214175
Alignment:
Q  167 tttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    |||||||  |||||||||||||  |||||||||||||||| || |||||| ||||||||||||| |||||    
T  38214106 tttggtccaatttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatatcc 38214175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 40442674 - 40442774
Alignment:
Q  130 ctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttt 229  Q
    ||||| ||||||||| |||||| | ||||||    | |||| || ||||||||||||||| |||||||||||||||| || |||||| |||||| |||||    
T  40442674 ctccggtcctatataaaagaaatttttcaaatttttttttgatcctatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttt 40442773  T
Q  230 t 230  Q
    |    
T  40442774 t 40442774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 40503868 - 40503931
Alignment:
Q  167 tttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    |||||||  |||||||||||||| |||||||||||||||| || |||||| |||||| ||||||    
T  40503868 tttggtcccatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaactttt 40503931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 9045699 - 9045642
Alignment:
Q  178 ttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    |||||||||||| ||||||||||||| ||||| |||||| |||||||| ||||||||||    
T  9045699 ttataagaaaatgtcacaacttttaa-gtataattattgtttaaaagaattttctatcc 9045642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 39063740 - 39063686
Alignment:
Q  176 atttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    |||||||||||||  |||||||||||||||| || |||||| |||||||||||||    
T  39063740 atttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagactttt 39063686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 16781256 - 16781320
Alignment:
Q  168 ttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    |||||| ||||||||||||||  |||||||||| |||||||| ||| || ||||||||||||||||    
T  16781256 ttggtcatatttataagaaaaagtcacaacttt-aaggtataattaatgtttaaaagacttttcta 16781320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 7011096 - 7011154
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    ||||||||||||||  |||||| ||||||| || | |||||| ||||||||||||||||    
T  7011096 tatttataagaaaaagtcacaatttttaagatacatttattgtttaaaagacttttcta 7011154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 16268375 - 16268429
Alignment:
Q  185 aaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatccttt 239  Q
    |||||||||||||||||||| ||| ||||||| | |||| ||||||||| |||||    
T  16268375 aaaatatcacaacttttaagatattgttattgttcaaaatacttttctaaccttt 16268429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 28650323 - 28650282
Alignment:
Q  193 acaacttttaaggtatagttattgcttaaaagacttttctat 234  Q
    |||||||||||||| ||||||||  |||||||||||||||||    
T  28650323 acaacttttaaggtgtagttattatttaaaagacttttctat 28650282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 21794827 - 21794907
Alignment:
Q  146 aagaaaatattcaaaaaacta-tttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaaga 225  Q
    |||||||| |||||||||  | |||||||  |||||||||||||  |||||||||||||||| || | |||| ||||||||    
T  21794827 aagaaaattttcaaaaaaaaaatttggtccaatttataagaaaaattcacaacttttaaggtgtattaattgtttaaaaga 21794907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 17971548 - 17971451
Alignment:
Q  136 tcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    ||||||||| |||||||| ||||||||||  ||||||| ||||||||||||||  ||||||||||||||||||| |||||| ||||||||||||||||    
T  17971548 tcctatatataagaaaattttcaaaaaacgttttggtcctatttataagaaaaagtcacaacttttaaggtatatttattgtttaaaagacttttcta 17971451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 36437392 - 36437286
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactt 228  Q
    |||||| ||||  ||| |||||||| |||||||||   ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  36437392 cctccggtccttaatataagaaaattttcaaaaaaagttttggtcctatttataagaaaatgtcacaacttttaagg-atagttattgcttaaaagactt 36437294  T
Q  229 ttctatcc 236  Q
    || |||||    
T  36437293 ttttatcc 36437286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 27442547 - 27442460
Alignment:
Q  146 aagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    |||||||| |||||||||  | |||||| |||||||||||||| |||||||||||||| ||||| ||| || ||||||||||||||||    
T  27442547 aagaaaattttcaaaaaaaaacttggtcctatttataagaaaaaatcacaacttttaaagtatatttagtgtttaaaagacttttcta 27442460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 39150324 - 39150269
Alignment:
Q  178 ttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  39150324 ttataagaaaatatcactacttttaaggtgtagttattgcttaaaagacttttcta 39150269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 28165289 - 28165217
Alignment:
Q  158 aaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    |||||| ||||||||  ||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||    
T  28165289 aaaaaattatttggttctatttataataaaatgtcacaactttaaaggtatagttattgcttaaaagattttt 28165217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 31181206 - 31181144
Alignment:
Q  168 ttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    ||||| |||||||||||||||| |||||||||||||  ||||||||||| |||||||||||||    
T  31181206 ttggttttatttataagaaaatgtcacaacttttaacttatagttattgtttaaaagactttt 31181144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 34702197 - 34702259
Alignment:
Q  169 tggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttc 231  Q
    ||||| ||||||| |||||||||| ||||||||||| | ||||||||||||||||||||||||    
T  34702197 tggtcatatttattagaaaatatctcaacttttaagttgtagttattgcttaaaagacttttc 34702259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 17988427 - 17988375
Alignment:
Q  178 ttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    |||||||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  17988427 ttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagactttt 17988375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 52337000 - 52336954
Alignment:
Q  177 tttataagaaaatatcacaacttttaaggtatagttattgcttaaaa 223  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  52337000 tttataagaaaatgtcacatcttttaaggtatagttattgcttaaaa 52336954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 9851959 - 9851898
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    ||||||||||||||| ||||||||||||| || ||||||||||||||| ||| ||| |||||    
T  9851959 tatttataagaaaatgtcacaacttttaaagtgtagttattgcttaaatgacctttttatcc 9851898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 42745499 - 42745600
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactt 228  Q
    |||||||||||  ||  |||||||  |||||||||  |||||||| ||||||||||||||| |||||| |||| | ||||| |||||| |||||| ||||    
T  42745499 cctccgatccttaatgtaagaaaaatttcaaaaaaaaatttggtcctatttataagaaaatgtcacaatttttgaagtataattattgtttaaaatactt 42745598  T
Q  229 tt 230  Q
    ||    
T  42745599 tt 42745600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 47977181 - 47977075
Alignment:
Q  1 ttctatcatgaaaaatctcattttg-gcattggagcatatggcttatatagtccacgtattgattttgcagttcgggatgctgattcaatccctctttga 99  Q
    |||||| ||||| |||||||||||  |||||| |||||||| |||| |  ||||| | ||||||||||||||||||||||||||||  || ||| |||||    
T  47977181 ttctattatgaagaatctcatttttagcattgtagcatatgtcttaaa--gtccatgcattgattttgcagttcgggatgctgattgcatacctatttga 47977084  T
Q  100 caaatttcc 108  Q
     ||||||||    
T  47977083 gaaatttcc 47977075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 28469935 - 28469998
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcctt 238  Q
    ||||||||| ||||| |||||| ||||||||| |||||||| |||||| | |||||||||||||    
T  28469935 tatttataaaaaaatgtcacaaattttaaggtgtagttattacttaaatgtcttttctatcctt 28469998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 31003732 - 31003677
Alignment:
Q  170 ggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaaga 225  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| || ||||||||    
T  31003732 ggtcctatttataagaaaatgtcacaacttttaaggtgtagttactgtttaaaaga 31003677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 2619875 - 2619805
Alignment:
Q  128 tcctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaact 198  Q
    |||||||||| |||||| || |||| | | |||| | | ||||||||||||||||||||||||||||||||    
T  2619875 tcctccgatcttatatataaaaaaaaaattaaaatattttttggtcttatttataagaaaatatcacaact 2619805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 46443703 - 46443764
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    ||||||||||||||  |||||||||||||||| || ||||| ||||||| |||||| |||||    
T  46443703 tatttataagaaaacgtcacaacttttaaggtgtaattattacttaaaaaacttttttatcc 46443764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 11435554 - 11435602
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaa 223  Q
    ||||||||||||||| ||||||||| ||||||||| |||||| ||||||    
T  11435554 tatttataagaaaatgtcacaacttataaggtataattattgtttaaaa 11435602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 31152431 - 31152491
Alignment:
Q  170 ggtcttatttataaga-aaatatcacaacttttaaggtatagttattgcttaaaagacttt 229  Q
    |||| ||||||||| | ||||||||||||||||||| | | ||||||||||||||||||||    
T  31152431 ggtcctatttataaaagaaatatcacaacttttaagatgtcgttattgcttaaaagacttt 31152491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 32715648 - 32715751
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactt 228  Q
    |||||| ||||||||| || ||||| ||  |||||  |||||||| ||||||||||||||  |||||| |||||||||  | |||||| ||||||| |||    
T  32715648 cctccggtcctatatataacaaaattttttaaaaaaaatttggtcctatttataagaaaaagtcacaaattttaaggt-catttattgtttaaaagtctt 32715746  T
Q  229 ttcta 233  Q
    |||||    
T  32715747 ttcta 32715751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 948298 - 948228
Alignment:
Q  166 atttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    |||| ||||||| ||||||||||| | |||| ||||||| | ||||||| || ||||||| ||||||||||    
T  948298 atttagtcttatctataagaaaatgttacaatttttaagatgtagttatagcctaaaagatttttctatcc 948228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 24547398 - 24547467
Alignment:
Q  146 aagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttatt 215  Q
    |||||||| ||||||||  | |||| || ||||||||||||||| |||||| ||||||| | ||||||||    
T  24547398 aagaaaattttcaaaaatttttttgatcctatttataagaaaatgtcacaagttttaagatgtagttatt 24547467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 42455067 - 42454964
Alignment:
Q  128 tcctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatat--cacaacttttaaggtatagttattgcttaaaaga 225  Q
    ||||||| || |||||| |||||||| || ||||||  ||||||||  |||||||| |||| ||  ||||||||||||||| |||| | || ||||||||    
T  42455067 tcctccggtcttatatataagaaaatgttaaaaaaaa-atttggtccaatttataaaaaaaaatgtcacaacttttaaggtgtagtgaatgtttaaaaga 42454969  T
Q  226 ctttt 230  Q
    |||||    
T  42454968 ctttt 42454964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 18704953 - 18705064
Alignment:
Q  128 tcctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagact 227  Q
    ||||||||||| ||||| |||||||| ||||||||| | |||||||  | ||||||||||| |||| |||||||||||| |||||||| |||||||||||    
T  18704953 tcctccgatccgatatataagaaaattttcaaaaaaatctttggtccaaattataagaaaacatcataacttttaaggtgtagttattacttaaaagact 18705052  T
Q  228 tttctatccttt 239  Q
    ||| || |||||    
T  18705053 tttttacccttt 18705064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 6688752 - 6688849
Alignment:
Q  139 tatatacaagaaaatattcaaaaaactatt-tggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    |||||| |||||||| ||||||||| |||| ||||| ||  |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  6688752 tatatataagaaaattttcaaaaaa-tattatggtcctaaatataagaaaatatcacaacttttaaggtgtagttattgtttaaaagacttttctatcc 6688849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 3629355 - 3629295
Alignment:
Q  176 atttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    |||||||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||    
T  3629355 atttataagaaaatgtcacaacttttaaggtgtagttattacttaaaagacttttgtatcc 3629295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 10656555 - 10656492
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcctt 238  Q
    ||||||||||||||||||| |||||||| | | ||||||||||||||||||||| |||||||||    
T  10656555 tatttataagaaaatatcaaaacttttatgatgtagttattgcttaaaagacttatctatcctt 10656492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 27193012 - 27193075
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcctt 238  Q
    |||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  27193012 tatttataaggaaatgtcacaacttttaagatatagttattgtttaaaagacttttttatcctt 27193075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 73565 - 73627
Alignment:
Q  173 cttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatc 235  Q
    |||| |||||| ||| ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  73565 cttaattataaaaaattatcacaacctttaaggtgtagttattgcttaaaagacttttctatc 73627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 19296300 - 19296243
Alignment:
Q  179 tataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    ||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||    
T  19296300 tataaaaaaatgtcacaacttttaaagtgtagttattgcttaaaagacttttctatcc 19296243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 3257354 - 3257296
Alignment:
Q  177 tttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatc 235  Q
    |||||||||||||||||||||||||||||  ||  ||||| ||||||||||||||||||    
T  3257354 tttataagaaaatatcacaacttttaaggcgtaactattgtttaaaagacttttctatc 3257296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 10705027 - 10705085
Alignment:
Q  177 tttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    ||||||||||||| |||||| ||||||||| ||||| ||  |||||||||||||||||||    
T  10705027 tttataagaaaatgtcacaatttttaaggtgtagtt-ttatttaaaagacttttctatcc 10705085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 43442044 - 43442106
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcctt 238  Q
    ||||||||||||||| | ||| |||| ||||||||||||||||||||||||  ||| |||||||    
T  43442044 tatttataagaaaattttacatcttt-aaggtatagttattgcttaaaagatatttttatcctt 43442106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 4449434 - 4449495
Alignment:
Q  171 gtcttatttataagaaaatatcacaacttttaag--gtatagttattgcttaaaagactttt 230  Q
    ||||||||||||||||||| |||||| |||||||  || || ||||| ||||||||||||||    
T  4449434 gtcttatttataagaaaatgtcacaatttttaaggtgtgtatttatttcttaaaagactttt 4449495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 11691233 - 11691151
Alignment:
Q  146 aagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactt 228  Q
    |||||||| |||||||||  | |||||| |||||||||  |||| || ||| |||| |||| |||||||| ||||||||||||    
T  11691233 aagaaaattttcaaaaaataaattggtcctatttataaacaaatgtcgcaattttttaggtgtagttatttcttaaaagactt 11691151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 35931539 - 35931603
Alignment:
Q  168 ttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttct 232  Q
    |||||| ||||||||||||||| ||| ||||| ||| || ||||||||  ||||| |||||||||    
T  35931539 ttggtcctatttataagaaaatttcataacttctaaagtgtagttattttttaaatgacttttct 35931603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 3006 - 3084
Alignment:
Q  158 aaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    |||||| | ||||||| ||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||    
T  3006 aaaaaagtttttggtcctatttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttctatcc 3084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 180302 - 180396
Alignment:
Q  136 tcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    ||||| ||| |||||||| ||||||||| |  |||||| |||||||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  180302 tcctaaatataagaaaattttcaaaaaatttgttggtcctatttataagaaaatatcacaatttttaagatgtagttattgcttaaaagactttt 180396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 19780186 - 19780290
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactt 228  Q
    |||||||| ||||||| |||||||| |||||||||  |||||||| ||| ||||||||||  |  ||||||||||| |||| |||||| |||||||||||    
T  19780186 cctccgattctatatataagaaaattttcaaaaaaaaatttggtcctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaagactt 19780285  T
Q  229 ttcta 233  Q
    |||||    
T  19780286 ttcta 19780290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 606793 - 606709
Alignment:
Q  146 aagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    |||||||| |||||||   | ||||||| ||||||||||||||| |||||||||||||||| || |||| |||||||| ||||||    
T  606793 aagaaaattttcaaaattttttttggtcctatttataagaaaatgtcacaacttttaaggtgtacttatagcttaaaatactttt 606709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 1856752 - 1856812
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtat-agttattgcttaaaagacttttctatc 235  Q
    ||||||||| ||||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  1856752 tatttataaaaaaatatcacaacttttaa-gtatcagttattgtttaaaagacttttctatc 1856812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 3611554 - 3611623
Alignment:
Q  166 atttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    ||||| || ||||||||||||||| | |||||||| ||||||||||||||| |||||| | ||||||||||    
T  3611554 atttgatcctatttataagaaaatgttacaacttt-aaggtatagttattgtttaaaatatttttctatcc 3611623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 28363787 - 28363840
Alignment:
Q  177 tttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    ||||||||||||  ||||| |||||||||||||||||||| |||||||| ||||    
T  28363787 tttataagaaaacgtcacatcttttaaggtatagttattgattaaaagaatttt 28363840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 7926799 - 7926834
Alignment:
Q  168 ttggtcttatttataagaaaatatcacaacttttaa 203  Q
    |||||| |||||||||||||||||||||||||||||    
T  7926799 ttggtcatatttataagaaaatatcacaacttttaa 7926834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 9425503 - 9425548
Alignment:
Q  185 aaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    |||| |||||||||||| ||||||| |||||| |||||||||||||    
T  9425503 aaaaaatcacaacttttgaggtatatttattgtttaaaagactttt 9425548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 41508064 - 41508156
Alignment:
Q  138 ctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    ||||||| || ||||| |||||||||  |||||||| ||  |||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  41508064 ctatatataataaaattttcaaaaaaaaatttggtcctaaatataagaaaatatcacaatttttaaggtgtagttattgcttaaaagactttt 41508156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 12506663 - 12506770
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactt 228  Q
    |||||| ||||||||| |||||||| ||||||||    | ||||| ||  ||||||||||||| |||||||||||||| ||||||||| | |||||||||    
T  12506663 cctccggtcctatatataagaaaattttcaaaaataattctggtcctaaatataagaaaatattacaacttttaaggtgtagttattgttcaaaagactt 12506762  T
Q  229 ttctatcc 236  Q
    ||||||||    
T  12506763 ttctatcc 12506770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 37048573 - 37048640
Alignment:
Q  172 tcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatccttt 239  Q
    |||||||||||||||||||||||||||||||| || |||| |||| |||||||||||||||| |||||    
T  37048573 tcttatttataagaaaatatcacaacttttaaagtgtagtgattgtttaaaagacttttctacccttt 37048640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 46341502 - 46341556
Alignment:
Q  179 tataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  46341502 tataagaaaatatcacaacttttaaggtgtagttattgcttaaaagacttctcta 46341556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 12485231 - 12485338
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactt 228  Q
    |||||| ||||||||| |||||||| ||||||||    | ||||| ||  ||||| ||||||| |||||||||||||| ||||||||| | |||||||||    
T  12485231 cctccggtcctatatataagaaaattttcaaaaataattctggtcctaaatataataaaatattacaacttttaaggtgtagttattgttcaaaagactt 12485330  T
Q  229 ttctatcc 236  Q
    ||||||||    
T  12485331 ttctatcc 12485338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 2195810 - 2195864
Alignment:
Q  179 tataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    ||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  2195810 tataagaaaatatcataacttttaaggtgtagttattgtttaaaagacttttcta 2195864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 6549206 - 6549153
Alignment:
Q  185 aaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcctt 238  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||    
T  6549206 aaaatatcacaacttttaaggtatagttatttcttaaaagatttttttatcctt 6549153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 9183382 - 9183321
Alignment:
Q  177 tttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcctt 238  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||||| ||| |||||||    
T  9183382 tttataagaaaatgtcacatcttttaaggtatagttattgcttagaagacatttttatcctt 9183321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 46101366 - 46101301
Alignment:
Q  168 ttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    |||||||||||||||||||||| ||| |||||||||| | |||||||| || ||||||||||||||    
T  46101366 ttggtcttatttataagaaaatgtcataacttttaagttgtagttattactcaaaagacttttcta 46101301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 6549277 - 6549222
Alignment:
Q  146 aagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaactttt 201  Q
    |||||||| |||||||||  |||||||| |||||||||||||||||||||||||||    
T  6549277 aagaaaattttcaaaaaaaaatttggtcctatttataagaaaatatcacaactttt 6549222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 20949074 - 20949135
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||||| || |||| |||||    
T  20949074 tatttataagaaaatgtcataacttttaaggtgtagttattgcttaaatgatttttttatcc 20949135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 17757561 - 17757507
Alignment:
Q  172 tcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagac 226  Q
    |||||||||||||||||   |||||||||||||||| | ||||||||||||||||    
T  17757561 tcttatttataagaaaaagacacaacttttaaggtacatttattgcttaaaagac 17757507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 7307436 - 7307496
Alignment:
Q  170 ggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    |||| ||||||||||||||| ||||||||||||| |  ||||||||| |||||||| ||||    
T  7307436 ggtcatatttataagaaaatgtcacaacttttaaagagtagttattgtttaaaagattttt 7307496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 40017028 - 40016980
Alignment:
Q  171 gtcttatttataagaaaatatcacaacttttaaggtatagttattgctt 219  Q
    |||||| |||||||||||||| ||||||||||| || ||||||||||||    
T  40017028 gtcttaattataagaaaatataacaacttttaaagtgtagttattgctt 40016980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 42935409 - 42935513
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactt 228  Q
    |||||| || |||||| |||||||| |||||||   | ||||||  ||||||||||||||  ||||||||||| || || | |||||| |||||||| ||    
T  42935409 cctccggtcttatatataagaaaattttcaaaattttttttggttctatttataagaaaaagtcacaacttttgagatacatttattgtttaaaagattt 42935508  T
Q  229 ttcta 233  Q
    |||||    
T  42935509 ttcta 42935513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 943125 - 943192
Alignment:
Q  166 atttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    |||||||| |||||||||||||||  ||||| |||| |||| ||||||||| | ||||||| ||||||    
T  943125 atttggtcatatttataagaaaatgccacaattttttaggtgtagttattgttcaaaagacatttcta 943192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 14650246 - 14650191
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagactttt 230  Q
    ||||||||||||||| |||||| ||||||| | || ||||||| ||||||||||||    
T  14650246 tatttataagaaaatgtcacaatttttaagatgtatttattgcataaaagactttt 14650191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 46572428 - 46572369
Alignment:
Q  180 ataagaaaatatcacaactttt-aaggtatagttattgcttaaaagacttttctatcctt 238  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||||  ||| |||||||    
T  46572428 ataagaaaatatcacatctttttaaggtatagttatttcttaaaagatatttttatcctt 46572369  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 14568350 - 14568416
Alignment:
Q  167 tttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    ||||||| ||| ||||||||||  |  ||||||||||| |||| |||||| ||||||||||||||||    
T  14568350 tttggtcctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaagacttttcta 14568416  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 17205122 - 17205160
Alignment:
Q  167 tttggtcttatttataagaaaatatcacaacttttaagg 205  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  17205122 tttggtcctatttataagaaaatgtcacaacttttaagg 17205160  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 508464 - 508512
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaa 223  Q
    |||||| |||||||| |||||| |||||||||  |||||||||||||||    
T  508464 tatttagaagaaaatttcacaatttttaaggtgaagttattgcttaaaa 508512  T

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Target: scaffold0024 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 154295 - 154392
Alignment:
Q  129 cctccgatcctatatacaagaaaatattcaaaaaactatttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagac 226  Q
    |||||| ||||||||| ||| |||| ||   |||| | ||||||  ||||||||||||||||| |||||||||||||| ||||||||| |||||||||    
T  154295 cctccggtcctatatataaggaaatttttttaaaattttttggttctatttataagaaaatattacaacttttaaggtgtagttattgtttaaaagac 154392  T

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Target: scaffold0088 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 51274 - 51335
Alignment:
Q  175 tatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    |||||||||| |||| |||||||||||||||| || ||||||||||||||| |||| |||||    
T  51274 tatttataagtaaatgtcacaacttttaaggtgtatttattgcttaaaagatttttttatcc 51335  T

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Target: scaffold1809 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 651 - 583
Alignment:
Q  168 ttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttctatcc 236  Q
    |||||| || |||||||||||  ||||||| |||||||| ||||||||| ||||||||||||| |||||    
T  651 ttggtcctaattataagaaaaagtcacaacatttaaggtgtagttattgtttaaaagacttttttatcc 583  T

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Target: scaffold0015 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 38987 - 38921
Alignment:
Q  167 tttggtcttatttataagaaaatatcacaacttttaaggtatagttattgcttaaaagacttttcta 233  Q
    ||||||||||||||||||||||  |||||| ||||||| |||| |||||| |||||| | |||||||    
T  38987 tttggtcttatttataagaaaaagtcacaatttttaagatatatttattgtttaaaatatttttcta 38921  T

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