View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10440_low_20 (Length: 216)
Name: NF10440_low_20
Description: NF10440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10440_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 50966321 - 50966504
Alignment:
| Q |
15 |
cagagaacatcagaataacataagtccttggatccacctgttcaagtagttagaccttatccagtgtcatcgaaacaggttattggaacaactttggttg |
114 |
Q |
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| T |
50966321 |
cagagaacatcagaataacataagtccttggatccacctgttcaagtagttagaccttatccagtttcatcgaaacaggttattggaacaactttggttg |
50966420 |
T |
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| Q |
115 |
aagagtttttgttgcctgctagcttggtctgtatcgggctggctagattctcggaaccattctttggttggactttgtcgttga |
198 |
Q |
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| T |
50966421 |
aagagtttttgttgcctgctagcttggtctgtatcgggctggctagattctcggaaccattctttggttggactttgtcattga |
50966504 |
T |
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Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 50996520 - 50996701
Alignment:
| Q |
17 |
gagaacatcagaataacataagtccttggatccacctgttcaagtagttagaccttatccagtgtcatcgaaacaggttattggaacaactttggttgaa |
116 |
Q |
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|||||||||||||||||| |||| |||||||||||| | | | ||||||||||||| |||| ||||||| |||||||||| ||||||||||||| ||||| |
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| T |
50996520 |
gagaacatcagaataacagaagtgcttggatccaccagctgatgtagttagaccttctccaatgtcatcaaaacaggttactggaacaactttgtttgaa |
50996619 |
T |
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| Q |
117 |
gagtttttgttgcctgctagcttggtctgtatcgggctggctagattctcggaaccattctttggttggactttgtcgttga |
198 |
Q |
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| T |
50996620 |
gagtttttgtcgcctgcttgatttgtctgtatctggccggcaagattctcagaaccatcctttggttggactttgtcattga |
50996701 |
T |
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