View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10440_low_21 (Length: 208)
Name: NF10440_low_21
Description: NF10440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10440_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 24433279 - 24433072
Alignment:
| Q |
1 |
attctgaaatcctagacaacccaataaaatcttgctaaagaaattaatttgaaagaaaataaagatggcttttgtggaagtaaatgttattttttgggtg |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24433279 |
attctgaaatcctagacaacctaataaaatcttgctaaagaaattaatttgaaagaaaataaagatggcttttgtggaagtaaatgttattttttgggtg |
24433180 |
T |
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| Q |
101 |
tttaaaggtaaaagaaaagagagccaaatcggtcggttatagtttctcttaaaagatgtagtcgaaggcagtggaaagcaccataaggggacaagaacta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |
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| T |
24433179 |
tttaaaggtaaaagaaaagagagccaaatcggtcggttatagtttctcttaaaagatgtagtcaaaggcagtgaaaaacaccataaggggacaagaacta |
24433080 |
T |
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| Q |
201 |
ggtcatgt |
208 |
Q |
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|||||||| |
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| T |
24433079 |
ggtcatgt |
24433072 |
T |
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