View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_high_13 (Length: 359)

Name: NF10441_high_13
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_high_13
NF10441_high_13
[»] chr4 (4 HSPs)
chr4 (1-345)||(23904276-23904620)
chr4 (1-345)||(23922364-23922708)
chr4 (1-162)||(23912349-23912510)
chr4 (244-339)||(23912628-23912726)
[»] chr2 (1 HSPs)
chr2 (15-132)||(41597707-41597824)


Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 23904620 - 23904276
Alignment:
Q  1 cctcaacgccatcggcaaagtaatgagccaccctttgtgatgcatctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttct 100  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23904620 cctcaaggccattggcaaagtaatgagccaccctttgtgatgcatctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttct 23904521  T
Q  101 attgtcattggcatacatagcttgtgaacacataagcagaagattccttaaatctattgttttgtttttgctatcacgtttcttcggacgaacctttcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23904520 attgtcattggcatacatagcttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcacgtttcttcggacgaacctttcct 23904421  T
Q  201 tcattagatgaaggtagttgctcattctgcaaaggttcacggtccacattaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacac 300  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23904420 tcattagatgaaggtggttgctcattctgcaaaggttcacggtccacattaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacac 23904321  T
Q  301 taatagccgattgcttgttactactcccttcttcttcttcgcgcc 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23904320 taatagccgattgcttgttactactcccttcttcttcttcgcgcc 23904276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 23922364 - 23922708
Alignment:
Q  1 cctcaacgccatcggcaaagtaatgagccaccctttgtgatgcatctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttct 100  Q
    |||||| ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23922364 cctcaaggccattggcaaagtaatgagccaccctttgagatgcttctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttct 23922463  T
Q  101 attgtcattggcatacatagcttgtgaacacataagcagaagattccttaaatctattgttttgtttttgctatcacgtttcttcggacgaacctttcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||    
T  23922464 attgtcattggcatacatagcttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcacgtttcttgggacgaacctttcct 23922563  T
Q  201 tcattagatgaaggtagttgctcattctgcaaaggttcacggtccacattaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacac 300  Q
    || |||||||||||| |||||||||||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23922564 tcgttagatgaaggtggttgctcattctgcaaaaattcacgttccacgttaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacac 23922663  T
Q  301 taatagccgattgcttgttactactcccttcttcttcttcgcgcc 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23922664 taatagccgattgcttgttactactcccttcttcttcttcgcgcc 23922708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 23912349 - 23912510
Alignment:
Q  1 cctcaacgccatcggcaaagtaatgagccaccctttgtgatgcatctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttct 100  Q
    |||||| ||||| ||||||||||||||||| |||||||| | |||| ||| |||||||||||||||||||||||||||| |  || ||||||||||| ||    
T  23912349 cctcaaggccattggcaaagtaatgagccaacctttgtggtccatccccagagggtgaagaatgttgcctaatctgcttcagtagctcattagcattcct 23912448  T
Q  101 attgtcattggcatacatagcttgtgaacacataagcagaagattccttaaatctattgttt 162  Q
     |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  23912449 gttgtcattggcatacacagattgtgaacacataagcagaagattccttaaatctattgttt 23912510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 23912628 - 23912726
Alignment:
Q  244 ccacattaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacactaatagccgattgcttgttactactcc---cttcttcttctt 339  Q
    |||||||||||||| | ||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |||| ||||   ||||||||||||    
T  23912628 ccacattaagcaaaaccttatcaaacatctctgataattcatcctcatcaacagcactaatagctgattgcttgctacttctccaagcttcttcttctt 23912726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 41597824 - 41597707
Alignment:
Q  15 gcaaagtaatgagccaccctttgtgatgcatctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttctattgtcattggcat 114  Q
    ||||||||||||||||  || ||||||||||| ||  | || |||||||| | |||||||||||| || |  ||||||||| | ||||||||||| |||     
T  41597824 gcaaagtaatgagccattctctgtgatgcatcacctgaaggagaagaatggttcctaatctgcttcaacaattcattagcagtcctattgtcattagcag 41597725  T
Q  115 acatagcttgtgaacaca 132  Q
    | | |||||||| |||||    
T  41597724 atacagcttgtgcacaca 41597707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University