View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_high_17 (Length: 345)
Name: NF10441_high_17
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 50122235 - 50122525
Alignment:
| Q |
20 |
atgtgtaccctcaaacgactctcagtctcgtgcctgcaagaccgagaacatacatgtaaaagtgttaaaaatttcacgttgaatgtgatatatatctcac |
119 |
Q |
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| T |
50122235 |
atgtgtaccctcaaacgactctcagtctcgtgcctgcaagaccgagaacatacatgtaaa-gtgttaaaaatttcacattgaatgtgatatatatctcac |
50122333 |
T |
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| Q |
120 |
gttacatataagtcatgtagaacttatttaagttcaattcaaattctaaaatagatcaattagaatatgtgggtgcataatatatgctactacgtgcgat |
219 |
Q |
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| T |
50122334 |
gttacgtataagtcatgtagaacttatt-aagttcaattcaaattctaaaatagatcaattagaatatgtgggtgcataatatatgctactacgtgcgat |
50122432 |
T |
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| Q |
220 |
ttagactatgtttgtactttctgtaatcacattttggtttgtcaaatgtgattagaccataaattgttatgtttggattttagaattgattcc |
312 |
Q |
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| T |
50122433 |
ttagactatgtttgtactttctgtaatcacattttggtttgtcaaatgtgattagaccataaattattatgtttggactttagaattgattcc |
50122525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 50112654 - 50112692
Alignment:
| Q |
20 |
atgtgtaccctcaaacgactctcagtctcgtgcctgcaa |
58 |
Q |
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| T |
50112654 |
atgtgtaccctcaaacgactttcagtctcgtgcctgcaa |
50112692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 11458923 - 11458979
Alignment:
| Q |
244 |
aatcacattttggtttgtcaaatgtgattagaccataaattgttatgtttggatttt |
300 |
Q |
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| T |
11458923 |
aatcacattttggttaatcaaacgtgatttgaccataaattgttacgtttggctttt |
11458979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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