View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_high_2 (Length: 601)
Name: NF10441_high_2
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 27867229 - 27866686
Alignment:
| Q |
1 |
atccatccaaactcataccaaaactaattcccaaatgtcaaaattactttattaccttcttattactccttttatttggagtgtcttgttacaaatattg |
100 |
Q |
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| T |
27867229 |
atccatccaaactcataccaaaactaattcccaaatgtcaaaattactttattaccttcttattactcctttt--ttggagtgtcttgttacaaatatta |
27867132 |
T |
|
| Q |
101 |
tcattgatatttagaagagcaaccaaatcatctggttaatgaaatgttaagttaaacatagtgttgggtaatgtattacaaaatggtcctcgagatggaa |
200 |
Q |
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| T |
27867131 |
tcattgatatttaaaggagcaaccaaatcatcttgttaatgaaatgttaagttaaacatagtgttggatattgtattacaaaatggtcctcaagttggaa |
27867032 |
T |
|
| Q |
201 |
attacttcgttttctattt--aataaaaatcactgcgattacggggatgagatagggatactcgaatccattagagat-aggataagattcaatttatca |
297 |
Q |
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| T |
27867031 |
attacttctttttctatttaaaaaaaaaatcattgcgattacggggatgagatatggatactcgaatctggtagggatggggatgagattcaatttatca |
27866932 |
T |
|
| Q |
298 |
tccttattgagtatgagaatagggtaacatgcaagtatgtcacaatcaaggatggaaagggaaaggtaaaactcgtgtttatcccacactattgtcacgc |
397 |
Q |
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| T |
27866931 |
tccttattgaatat--aaataaggtaatatgcaagtatgtgacaatcaaggatggaaagggaaaggtaaaactcgtcccga-accggtccattatcacgc |
27866835 |
T |
|
| Q |
398 |
acttctttttggtcaacaacgtctttacgcacttcttaaaatgtgcgttttaccaatttatttaatgctctaaattaacaacaccttcaaggaaaggcca |
497 |
Q |
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| T |
27866834 |
atttctttttggtcaacaacgtatttatgcacttcttaaaatgtgcgttttaccaacttatttaatgctctaaattaacaacaccttcaaggaaaggcca |
27866735 |
T |
|
| Q |
498 |
atagcaataacattgaaataagacacggcaaattaagacaagaaaagag |
546 |
Q |
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| T |
27866734 |
gtagcaataacaatgaaataagacacggcaaattaagacaagaaaagag |
27866686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 38733935 - 38733838
Alignment:
| Q |
82 |
tgtcttgttacaaatattgtcattgatatttagaagagcaaccaaatcatctggttaatgaaatgttaagttaaacatagtgttgggtaatgtattac |
179 |
Q |
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|||| ||||| ||| ||||||||||||||||| | |||||||| |||||||||| ||||||||||||| |||| ||| |||||| ||||||||||| |
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| T |
38733935 |
tgtcatgttataaaaattgtcattgatatttaaagaagcaaccatatcatctggtcaatgaaatgttaaagtaaatatattgttggataatgtattac |
38733838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 38734007 - 38733963
Alignment:
| Q |
34 |
aatgtcaaaattactttattaccttcttattactccttttatttg |
78 |
Q |
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| T |
38734007 |
aatgtcaaaattactttattacctctttattactcattttatttg |
38733963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 70 - 184
Target Start/End: Original strand, 5864401 - 5864515
Alignment:
| Q |
70 |
ttttatttggagtgtcttgttacaaatattgtcattgatatttagaagagcaaccaaatcatctggttaatgaaatgttaagttaaacatagtgttgggt |
169 |
Q |
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|||||||||| || | ||||| ||| |||| |||| ||||||| ||||||||||||||||| |||| |||||||| |||| |||||||| |||||||| |
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| T |
5864401 |
ttttatttggtatgccatgttataaaaattgccatttatatttaaaagagcaaccaaatcatttggtcaatgaaatcttaaagtaaacataatgttgggt |
5864500 |
T |
|
| Q |
170 |
aatgtattacaaaat |
184 |
Q |
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| T |
5864501 |
aatgtattacaaaat |
5864515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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