View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_high_21 (Length: 325)
Name: NF10441_high_21
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_high_21 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 39083250 - 39082937
Alignment:
| Q |
1 |
atgttccatcatttgcaacaaccttggtgctctcttcatccacgcaaaagcagaaaacacaagtgtttccgacatccttaaaccagactatgttccttct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39083250 |
atgttccatcatttgcaacaaccttggtgctctcttcatccacgcaaaagcagaaaacacaagtgtttccgacatccttaaaccagactatgttccttct |
39083151 |
T |
|
| Q |
101 |
atagttcactcatttttcccacttaacggcattaaaaactacgaagccacgtctcaaccaattctagcagtccaagtaacggagttagctaacggcatct |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
39083150 |
atagttcactcatttttcccacttaacggcattaaaaactacgaagccacgtctcaaccaattctagcagtccaagtaacggagttaagtaacggtatct |
39083051 |
T |
|
| Q |
201 |
tcattggtttcactgtcaaccatgctgtttcagacggcaagtcattttggcatttcgtcaattcttggtctgaaatctcaaaaggttcccacaaaatatc |
300 |
Q |
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|||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39083050 |
tcattgctttcactgtcaaccatgttgttttagacggcaagtcattttggcatttcgtcaattcttggtctgaaatctcaaaaggttcccacaaaatatc |
39082951 |
T |
|
| Q |
301 |
caaactcccttcat |
314 |
Q |
| |
|
|||||||||||||| |
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| T |
39082950 |
caaactcccttcat |
39082937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 39088904 - 39088622
Alignment:
| Q |
1 |
atgttccatcatttgcaacaaccttggtgctctcttcatccacgcaaaagcagaaaacacaagtgtttccgacatccttaaaccagactatgttccttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| || || ||||||||||||||| |||||||||||||| |
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| T |
39088904 |
atgttccatcatttgcaacaacattggtgctctcttcatccacgccaaagcggaaaacacaaccgtatcagacatccttaaaccaaactatgttccttct |
39088805 |
T |
|
| Q |
101 |
atagttcactcatttttcccacttaacggcattaaaaactacgaagccacgtctcaaccaattctagcagtccaagtaacggagttagctaacggcatct |
200 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||| ||| |||||||||||||||||||| ||||||| |
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| T |
39088804 |
atagttcactcatttttcccacttaacggagttaaaaactacgaagccacttcacaaccaattctaggagttcaagtaacggagttagctaatggcatct |
39088705 |
T |
|
| Q |
201 |
tcattggtttcactgtcaaccatgctgtttcagacggcaagtcattttggcatttcgtcaattcttggtctgaaatctcaaaa |
283 |
Q |
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|||||||||| ||| ||||||| | ||||| ||||||||| |||||||||||| ||||| ||||||| ||||||||||| |
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| T |
39088704 |
tcattggtttgactctcaaccacgttgtttgtgacggcaagatgttttggcatttcatcaatacttggtcacaaatctcaaaa |
39088622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 39092295 - 39091982
Alignment:
| Q |
1 |
atgttccatcatttgcaacaaccttggtgctctcttcatccacgcaaaagcagaaaacacaagtgtttccgacatccttaaaccagactatgttccttct |
100 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||| |||| |||||||| ||||| |||| || || |||||||| ||||| |||| |||||||| |
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| T |
39092295 |
atgttccatcctttgcaacaacctcggtgctctcttcgtccatgcaaaagcggaaaatacaaccgtatcaaacatccttgaaccaaactacgttccttcc |
39092196 |
T |
|
| Q |
101 |
atagttcactcatttttcccacttaacggcattaaaaactacgaagccacgtctcaaccaattctagcagtccaagtaacggagttagctaacggcatct |
200 |
Q |
| |
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|| ||||| |||||||||||||| ||||| |||||||| |||||||||| || |||||||| |||| |||||||||||||||||||| |||||||||| |
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| T |
39092195 |
attgttcattcatttttcccactaaacggtgttaaaaaccacgaagccacttcacaaccaatcttagccgtccaagtaacggagttagccaacggcatct |
39092096 |
T |
|
| Q |
201 |
tcattggtttcactgtcaaccatgctgtttcagacggcaagtcattttggcatttcgtcaattcttggtctgaaatctcaaaaggttcccacaaaatatc |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||||| || || | |
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| T |
39092095 |
tcattggtttcactgtcaaccatgttgtttcagacggcaagtcattttggcatttcgtcaatacttggtcacaaatctccaaaaactcccacgaagtaac |
39091996 |
T |
|
| Q |
301 |
caaactcccttcat |
314 |
Q |
| |
|
||||||||||||| |
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| T |
39091995 |
aaaactcccttcat |
39091982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 107 - 314
Target Start/End: Complemental strand, 39071688 - 39071481
Alignment:
| Q |
107 |
cactcatttttcccacttaacggcattaaaaactacgaagccacgtctcaaccaattctagcagtccaagtaacggagttagctaacggcatcttcattg |
206 |
Q |
| |
|
||||| ||||| ||| |||||||| |||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| ||| ||| ||||||||| |
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| T |
39071688 |
cactcgttttttccatttaacggcgttaaaaactacgaagctacgtcaaaaccaactctagcagtccaagtaacggagttaagtaatggcgtcttcattg |
39071589 |
T |
|
| Q |
207 |
gtttcactgtcaaccatgctgtttcagacggcaagtcattttggcatttcgtcaattcttggtctgaaatctcaaaaggttcccacaaaatatccaaact |
306 |
Q |
| |
|
||||| |||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||| |
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| T |
39071588 |
aattcacatgcaaccacattgttgcagacgccaagtcattttggcatttcgtcaattcttggtcccaaatcttgaaaggttcccacaaaatatcaaaact |
39071489 |
T |
|
| Q |
307 |
cccttcat |
314 |
Q |
| |
|
|||||||| |
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|
| T |
39071488 |
cccttcat |
39071481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 39075922 - 39075867
Alignment:
| Q |
232 |
agacggcaagtcattttggcatttcgtcaattcttggtctgaaatctcaaaaggtt |
287 |
Q |
| |
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||||| ||||||||||||||||||| |||| |||||| ||||||||||| |||||| |
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| T |
39075922 |
agacgccaagtcattttggcatttcatcaactcttgggctgaaatctcacaaggtt |
39075867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 276
Target Start/End: Complemental strand, 39098529 - 39098306
Alignment:
| Q |
53 |
gaaaacacaagtgtttccgacatccttaaaccagactatgttccttctatagttcactcatttttcccacttaacggcattaaaaactacgaagccacgt |
152 |
Q |
| |
|
|||||||||||||| | ||| || |||||||| ||||||||||||| || |||||||| ||||| ||| |||| | ||||||||||||| ||| | |
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| T |
39098529 |
gaaaacacaagtgtcttcgatattgttaaaccaaactatgttccttccattgttcactctttttttccatttaataaagtaaaaaactacgaaggcacat |
39098430 |
T |
|
| Q |
153 |
ctcaaccaattctagcagtccaagtaacggagttagctaacggcatcttcattggtttcactgtcaaccatgctgtttcagacggcaagtcattttggca |
252 |
Q |
| |
|
| ||||| | || ||||| ||||| || ||| | | | | || || |||||||| ||| | |||| |||| |||| || || ||||| |||||||| |
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|
| T |
39098429 |
caaaaccattgcttgcagttcaagttactgagcttgttgatggtattttcattggcttctcaatcaatcatgttgttgtcgatggtaagtcgttttggca |
39098330 |
T |
|
| Q |
253 |
tttcgtcaattcttggtctgaaat |
276 |
Q |
| |
|
|||| ||||||| ||||||||||| |
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|
| T |
39098329 |
tttcatcaattcatggtctgaaat |
39098306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 7399146 - 7399098
Alignment:
| Q |
239 |
aagtcattttggcatttcgtcaattcttggtctgaaatctcaaaaggtt |
287 |
Q |
| |
|
|||||||||||||||||| |||| |||||| |||||||| || |||||| |
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|
| T |
7399146 |
aagtcattttggcatttcatcaactcttgggctgaaatcgcacaaggtt |
7399098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 132 - 306
Target Start/End: Complemental strand, 5215 - 5041
Alignment:
| Q |
132 |
ttaaaaactacgaagccacgtctcaaccaattctagcagtccaagtaacggagttagctaacggcatcttcattggtttcactgtcaaccatgctgtttc |
231 |
Q |
| |
|
||||||||||||||| || || |||||| | || ||| |||||||||||||||||| | |||||||||||||||| ||||| || ||||| | || |
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|
| T |
5215 |
ttaaaaactacgaaggaacatcacaaccattacttgcaatccaagtaacggagttagttgacggcatcttcattggcttcacagttaaccacgtgattgt |
5116 |
T |
|
| Q |
232 |
agacggcaagtcattttggcatttcgtcaattcttggtctgaaatctcaaaaggttcccacaaaatatccaaact |
306 |
Q |
| |
|
|| || | ||| |||||||||||| ||||||| ||| |||||||||| ||||||| | |||||||||||||| |
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|
| T |
5115 |
tgatggtacgtcgttttggcatttcatcaattcgtgggctgaaatctcgaaaggttgtcttaaaatatccaaact |
5041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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