View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_high_27 (Length: 257)

Name: NF10441_high_27
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_high_27
NF10441_high_27
[»] chr1 (20 HSPs)
chr1 (1-242)||(46543458-46543700)
chr1 (7-56)||(33125345-33125394)
chr1 (1-59)||(13489659-13489717)
chr1 (1-61)||(15705078-15705138)
chr1 (1-56)||(10890062-10890117)
chr1 (1-56)||(52362482-52362537)
chr1 (2-55)||(30570528-30570581)
chr1 (7-56)||(52714923-52714972)
chr1 (1-61)||(32915088-32915148)
chr1 (1-56)||(4213072-4213127)
chr1 (1-56)||(7171252-7171307)
chr1 (1-56)||(11822957-11823012)
chr1 (1-56)||(34254367-34254422)
chr1 (1-56)||(47214208-47214263)
chr1 (1-56)||(47642623-47642678)
chr1 (1-54)||(32926261-32926314)
chr1 (11-56)||(34008180-34008225)
chr1 (7-56)||(43755701-43755749)
chr1 (11-56)||(47820527-47820572)
chr1 (16-56)||(32873341-32873381)
[»] chr5 (22 HSPs)
chr5 (1-56)||(32912038-32912093)
chr5 (1-56)||(34124621-34124676)
chr5 (1-56)||(189719-189774)
chr5 (1-56)||(19481198-19481253)
chr5 (7-56)||(38704219-38704268)
chr5 (1-56)||(6517712-6517767)
chr5 (1-56)||(19840002-19840057)
chr5 (1-56)||(35473323-35473378)
chr5 (3-56)||(8686891-8686943)
chr5 (7-56)||(17097824-17097873)
chr5 (11-55)||(10649436-10649480)
chr5 (16-56)||(30420626-30420666)
chr5 (1-56)||(3935229-3935284)
chr5 (1-56)||(6940166-6940221)
chr5 (1-56)||(8675449-8675504)
chr5 (1-56)||(8920078-8920133)
chr5 (1-56)||(18511812-18511867)
chr5 (1-56)||(19982002-19982057)
chr5 (1-56)||(40829414-40829469)
chr5 (11-56)||(17402948-17402993)
chr5 (15-52)||(33901926-33901963)
chr5 (11-56)||(40039290-40039335)
[»] chr3 (28 HSPs)
chr3 (1-56)||(24095422-24095477)
chr3 (1-56)||(3953491-3953546)
chr3 (1-56)||(30863092-30863147)
chr3 (1-56)||(34057969-34058024)
chr3 (1-62)||(55399993-55400054)
chr3 (1-55)||(39697238-39697292)
chr3 (11-56)||(13934628-13934673)
chr3 (1-66)||(22371181-22371246)
chr3 (7-56)||(42683827-42683876)
chr3 (1-65)||(38671609-38671672)
chr3 (7-66)||(1280150-1280208)
chr3 (1-44)||(3648591-3648634)
chr3 (1-56)||(10811135-10811190)
chr3 (7-54)||(18741119-18741166)
chr3 (1-56)||(27168698-27168753)
chr3 (1-56)||(37057074-37057129)
chr3 (1-56)||(43904973-43905028)
chr3 (1-56)||(49417575-49417630)
chr3 (17-55)||(8839869-8839907)
chr3 (1-55)||(20080074-20080128)
chr3 (16-66)||(20549416-20549465)
chr3 (6-56)||(23183607-23183657)
chr3 (7-61)||(28539763-28539816)
chr3 (1-55)||(29634088-29634142)
chr3 (18-56)||(35755984-35756022)
chr3 (19-56)||(1337861-1337898)
chr3 (17-57)||(3347154-3347194)
chr3 (1-53)||(49167753-49167805)
[»] chr2 (26 HSPs)
chr2 (1-56)||(9634452-9634507)
chr2 (11-61)||(15269856-15269906)
chr2 (1-56)||(30546385-30546440)
chr2 (11-53)||(37105644-37105686)
chr2 (1-58)||(13765398-13765455)
chr2 (11-56)||(36517196-36517241)
chr2 (1-56)||(1416055-1416110)
chr2 (1-56)||(6999084-6999139)
chr2 (1-59)||(18723591-18723649)
chr2 (11-53)||(32869829-32869871)
chr2 (11-56)||(4061985-4062030)
chr2 (1-62)||(25881538-25881599)
chr2 (7-56)||(38821366-38821415)
chr2 (1-53)||(2563707-2563759)
chr2 (1-56)||(6170630-6170685)
chr2 (1-56)||(8427552-8427607)
chr2 (1-56)||(12784415-12784470)
chr2 (1-63)||(7648385-7648446)
chr2 (11-53)||(22526020-22526062)
chr2 (18-56)||(22620202-22620240)
chr2 (3-53)||(37077792-37077842)
chr2 (1-63)||(40504217-40504279)
chr2 (1-54)||(14233735-14233788)
chr2 (3-52)||(38911948-38911997)
chr2 (11-56)||(44050015-44050060)
chr2 (16-56)||(18508078-18508118)
[»] chr8 (26 HSPs)
chr8 (7-57)||(41659372-41659422)
chr8 (1-56)||(12783766-12783821)
chr8 (1-56)||(43397556-43397611)
chr8 (11-56)||(31596948-31596993)
chr8 (1-56)||(4658279-4658334)
chr8 (1-56)||(8645165-8645220)
chr8 (1-56)||(9208066-9208121)
chr8 (1-56)||(22960433-22960488)
chr8 (7-56)||(7375801-7375850)
chr8 (1-53)||(9549215-9549267)
chr8 (1-56)||(3946240-3946295)
chr8 (1-56)||(5601003-5601058)
chr8 (1-56)||(5639562-5639617)
chr8 (1-56)||(12707149-12707204)
chr8 (1-56)||(28756535-28756590)
chr8 (1-56)||(33605094-33605149)
chr8 (1-35)||(28756682-28756716)
chr8 (1-55)||(44061718-44061772)
chr8 (11-52)||(3206355-3206396)
chr8 (15-56)||(4312548-4312589)
chr8 (16-57)||(9314410-9314451)
chr8 (7-56)||(24479236-24479284)
chr8 (9-58)||(37792187-37792236)
chr8 (7-56)||(38708318-38708367)
chr8 (18-58)||(20852917-20852957)
chr8 (1-61)||(45529262-45529322)
[»] chr7 (15 HSPs)
chr7 (1-61)||(35586789-35586849)
chr7 (1-56)||(35452589-35452644)
chr7 (1-55)||(3343346-3343400)
chr7 (1-56)||(8904423-8904478)
chr7 (1-56)||(18111628-18111683)
chr7 (1-56)||(37899229-37899284)
chr7 (1-56)||(37899323-37899378)
chr7 (11-56)||(41893915-41893960)
chr7 (1-53)||(24532959-24533011)
chr7 (1-56)||(8920865-8920920)
chr7 (1-56)||(37352110-37352165)
chr7 (1-56)||(46880902-46880957)
chr7 (1-56)||(47012586-47012641)
chr7 (11-56)||(22638910-22638955)
chr7 (1-58)||(39823807-39823864)
[»] chr4 (31 HSPs)
chr4 (1-56)||(13139148-13139203)
chr4 (2-56)||(56271360-56271414)
chr4 (3-56)||(1816018-1816071)
chr4 (11-56)||(2999112-2999157)
chr4 (11-56)||(53654776-53654821)
chr4 (1-56)||(12595647-12595702)
chr4 (1-55)||(2401611-2401665)
chr4 (1-59)||(33860644-33860702)
chr4 (1-65)||(39158097-39158160)
chr4 (1-56)||(4915689-4915744)
chr4 (1-56)||(6494909-6494964)
chr4 (1-56)||(7627848-7627903)
chr4 (1-56)||(21617183-21617238)
chr4 (1-56)||(26206993-26207048)
chr4 (1-56)||(40609610-40609665)
chr4 (1-56)||(44626605-44626660)
chr4 (1-56)||(50506393-50506448)
chr4 (1-56)||(51225541-51225596)
chr4 (1-56)||(56557733-56557788)
chr4 (17-59)||(40721996-40722038)
chr4 (11-56)||(9362704-9362749)
chr4 (30-59)||(12705125-12705154)
chr4 (19-56)||(26718380-26718417)
chr4 (19-56)||(26731008-26731045)
chr4 (1-54)||(32130252-32130305)
chr4 (11-56)||(45851760-45851805)
chr4 (1-57)||(30170036-30170092)
chr4 (1-53)||(38519796-38519848)
chr4 (2-54)||(38715251-38715303)
chr4 (1-65)||(51255738-51255801)
chr4 (1-53)||(52895230-52895282)
[»] scaffold1956 (1 HSPs)
scaffold1956 (2-56)||(771-825)
[»] chr6 (11 HSPs)
chr6 (7-65)||(23628351-23628409)
chr6 (1-56)||(2689080-2689135)
chr6 (1-56)||(20822884-20822939)
chr6 (1-56)||(32459533-32459588)
chr6 (1-53)||(5522654-5522706)
chr6 (1-57)||(17182098-17182154)
chr6 (1-56)||(33651020-33651075)
chr6 (14-56)||(34036979-34037021)
chr6 (11-56)||(21393603-21393648)
chr6 (1-62)||(34442079-34442140)
chr6 (1-61)||(15318204-15318264)
[»] scaffold0141 (1 HSPs)
scaffold0141 (1-56)||(11934-11987)
[»] scaffold0160 (1 HSPs)
scaffold0160 (7-56)||(26421-26470)
[»] scaffold0083 (1 HSPs)
scaffold0083 (11-56)||(44792-44837)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-61)||(28343-28403)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 46543458 - 46543700
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttataatatgtcattgtcccacacaaaatcacgaatacaatag 100  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46543458 agagagaaaattatcacaaagattatcataaaatggatgttcaaatatcatttctccttataatatgtcattgtcccacacaaaatcacgaatacaatag 46543557  T
Q  101 tannnnnnn-cagagtttgataagacatattgacatgggggagagaacttaactgatacgtagctccaattcagaatccaaatgttgaaacaaatcatgg 199  Q
    ||        ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46543558 tattttttttcagagtttgataagacatattgacatgggtgagagaacttaactgatacgtagctccaattcagaatccaaatgttgaaacaaatcatgg 46543657  T
Q  200 tgccctctgcccattacattgcaccaaatcatctctcccacct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46543658 tgccctctgcccattacattgcaccaaatcatctctcccacct 46543700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 33125345 - 33125394
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33125345 aaaattgtcacaaaaattatcataaaatggatgttcaaatatcatttctc 33125394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13489717 - 13489659
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctcctt 59  Q
    ||||| ||| ||||||||||| || ||||||||||||||||||| ||||||||||||||    
T  13489717 agagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctcctt 13489659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15705078 - 15705138
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttat 61  Q
    ||||| ||| ||||||||||| || ||||||||||||||||||| ||||||||||| ||||    
T  15705078 agagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctctttat 15705138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 10890062 - 10890117
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| || ||||||||||||||||||| |||||||||||    
T  10890062 agagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 10890117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 52362537 - 52362482
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| || ||||||||||||||||||| |||||||||||    
T  52362537 agagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 52362482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 30570581 - 30570528
Alignment:
Q  2 gagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttct 55  Q
    |||||||||||||||||||| |||||| ||| ||| ||||||| ||||||||||    
T  30570581 gagataaaattgtcacaaaatttatcaaaaagtggttgttcaactatcatttct 30570528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 52714923 - 52714972
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||||||| || | ||||||||||||||||| |||||||||||    
T  52714923 aaaattgtcacaaaagttgttataaaatggatgttcaaatatcatttctc 52714972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 32915088 - 32915148
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttat 61  Q
    ||||| ||| ||||||||||| || ||||||||| ||||||||| ||||||||||| ||||    
T  32915088 agagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctctttat 32915148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 4213127 - 4213072
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| |||||| ||||||| ||||||| |||||||||||    
T  4213127 agagagaaagttgtcacaaaagttatcaaaaaatggttgttcaaatatcatttctc 4213072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7171252 - 7171307
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||| ||||||||||| || |||| |||| ||||||||| |||||||||||    
T  7171252 agagataaagttgtcacaaaagttgtcattaaatagatgttcaaatatcatttctc 7171307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11823012 - 11822957
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||||| ||||||| || | |||| ||||||||| |||||||||||    
T  11823012 agagataaaattgtcataaaaattgtcttcaaatagatgttcaaatatcatttctc 11822957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34254367 - 34254422
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||| |||||||| || || |||||||||| |||||||| |||||||||||    
T  34254367 agagataaagttgtcacagaagttgtcataaaatgaatgttcaaatatcatttctc 34254422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 47214263 - 47214208
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| || ||||||||| ||||||||| |||||||||||    
T  47214263 agagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctc 47214208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 47642623 - 47642678
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| |||||| ||||||| ||||||| |||||||||||    
T  47642623 agagagaaagttgtcacaaaagttatcaaaaaatggttgttcaaatatcatttctc 47642678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32926314 - 32926261
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttc 54  Q
    ||||| |||||| |||||||| |||||||||||||  ||||||| |||||||||    
T  32926314 agagaaaaaattatcacaaaagttatcataaaatgattgttcaaatatcatttc 32926261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 34008225 - 34008180
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||| || ||||||||| ||||||||| |||||||||||    
T  34008225 ttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctc 34008180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 43755701 - 43755749
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||| ||||||||||||||||||| ||| ||| |||||||||||    
T  43755701 aaaattgtca-aaaaattatcataaaatggttgtacaaatatcatttctc 43755749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 47820527 - 47820572
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||| |||||| || ||||||||||||||||||| |||||||||||    
T  47820527 ttgtaacaaaagttgtcataaaatggatgttcaaatatcatttctc 47820572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 32873381 - 32873341
Alignment:
Q  16 acaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||| |||||||||||||||||| ||| |||||||||||    
T  32873381 acaaaagttatcataaaatggatgtacaaatatcatttctc 32873341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 32912093 - 32912038
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  32912093 agagagaaaattgtcacaaaaattatcataaaatgaatgttcaaatatcatttctc 32912038  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34124676 - 34124621
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  34124676 agagagaaaattatcacaaaaattatcataaaatggatgttcaaatatcatttctc 34124621  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 189719 - 189774
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||    
T  189719 agagagaaagttgtcacaaaagttatcataaaatggatgttcaaatatcatttctc 189774  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19481198 - 19481253
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||    
T  19481198 agagagaaagttgtcacaaaagttatcataaaatggatgttcaaatatcatttctc 19481253  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 38704219 - 38704268
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||  |||||||||||||||||||||||||||| |||||||||||    
T  38704219 aaaattgttgcaaaaattatcataaaatggatgttcaaatatcatttctc 38704268  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 6517767 - 6517712
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| || ||||||||||||||||||| |||||||||||    
T  6517767 agagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 6517712  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19840002 - 19840057
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||||||||||||| |||||||||| |||||||| |||||||||||    
T  19840002 agagagaaagttgtcacaaaaattgtcataaaatgaatgttcaaatatcatttctc 19840057  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 35473378 - 35473323
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||||||||||||||||||||||| ||| ||||| |||||||||||    
T  35473378 agagagaaagttgtcacaaaaattatcataaaatagatattcaaatatcatttctc 35473323  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 8686943 - 8686891
Alignment:
Q  3 agataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||||||||||||||| ||||||| ||||||| | |||||||||    
T  8686943 agataaaattgtcacaaaaattatca-aaaatggttgttcaaatctcatttctc 8686891  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 17097824 - 17097873
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||||||| |||||| ||||||| ||||||| |||||||||||    
T  17097824 aaaattgtcacaaaagttatcaaaaaatggttgttcaaatatcatttctc 17097873  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 10649480 - 10649436
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttct 55  Q
    ||||||||||| || ||||||||||||||||||| ||||||||||    
T  10649480 ttgtcacaaaagttgtcataaaatggatgttcaaatatcatttct 10649436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 30420666 - 30420626
Alignment:
Q  16 acaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  30420666 acaaaaattatcataaaatggatgtacaaatatcatttctc 30420626  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3935284 - 3935229
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| |||||||||||||||||||||| ||||| | |||||||  ||||||||||    
T  3935284 agagagaaaattgtcacaaaaattatcaaaaaattgttgttcaatgatcatttctc 3935229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 6940166 - 6940221
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||||||||||||||| ||||||||| ||| ||| |||||||||||    
T  6940166 agagagaaagttgtcacaaaaattattataaaatggttgtacaaatatcatttctc 6940221  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8675449 - 8675504
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||||||||  ||||| |||||| ||||||||||||||| |||||||||||    
T  8675449 agagagaaaattgttgcaaaagttatcacaaaatggatgttcaaatatcatttctc 8675504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 8920133 - 8920078
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| || ||| ||||||||||||||| |||||||||||    
T  8920133 agagagaaagttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttctc 8920078  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 18511812 - 18511867
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||||||||  |||||||||||| |||||| |||||||| |||||||||||    
T  18511812 agagagaaaattgtagcaaaaattatcacaaaatgaatgttcaaatatcatttctc 18511867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19982002 - 19982057
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| |||||||||||||||||||||| ||||||  |||| || |||||||||||    
T  19982002 agagaaaaaattgtcacaaaaattatcaaaaaatgattgttaaaatatcatttctc 19982057  T

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Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 40829469 - 40829414
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| |||||||||||||||||||| | ||||||| ||| ||| |||||||||||    
T  40829469 agagaaaaaattgtcacaaaaattattaaaaaatggttgtacaaatatcatttctc 40829414  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 17402948 - 17402993
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||| |||  |||||||||||||| |||||||||||    
T  17402948 ttgtcacaaaaattgtcaccaaatggatgttcaaatatcatttctc 17402993  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 33901926 - 33901963
Alignment:
Q  15 cacaaaaattatcataaaatggatgttcaagtatcatt 52  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  33901926 cacaaaaattatcataaaatggttgttcaaatatcatt 33901963  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 40039335 - 40039290
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||||||| ||||| | ||||||| |||||||||||    
T  40039335 ttgtcacaaaaattatcaaaaaatagttgttcaaatatcatttctc 40039290  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24095422 - 24095477
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  24095422 agagagaaagttgtcacaaaaattatcataaaatggatgttcaaatatcatttctc 24095477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3953491 - 3953546
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||||||||||||||| |||||||||| |||||||||||    
T  3953491 agagagaaagttgtcacaaaaattatcataaaagggatgttcaaatatcatttctc 3953546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 30863092 - 30863147
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||||||||||| |||||||||||||| |||||||||||    
T  30863092 agagagaaagttgtcacaaaaattatcatcaaatggatgttcaaatatcatttctc 30863147  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 34057969 - 34058024
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||    
T  34057969 agagagaaagttgtcacaaaagttatcataaaatggatgttcaaatatcatttctc 34058024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 55400054 - 55399993
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttata 62  Q
    ||||| ||| ||||||||||| || ||||||||||||||||||| |||||||||||| ||||    
T  55400054 agagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctccatata 55399993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 39697238 - 39697292
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttct 55  Q
    ||||| ||| |||| ||||||||||||| ||||||||||||||| ||||||||||    
T  39697238 agagagaaagttgttacaaaaattatcacaaaatggatgttcaaatatcatttct 39697292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 13934628 - 13934673
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||||    
T  13934628 ttgtcacaaaagttatcatcaaatggatgttcaaatatcatttctc 13934673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 22371246 - 22371181
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttataatat 66  Q
    ||||| |||||| | |||||| ||||||  |||||||||||||| ||||||||||||||| |||||    
T  22371246 agagagaaaattattacaaaagttatcactaaatggatgttcaaatatcatttctccttaaaatat 22371181  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 42683876 - 42683827
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||| ||||||||||||| |||||| |||||||| |||||||||||    
T  42683876 aaaattgtaacaaaaattatcacaaaatgaatgttcaaatatcatttctc 42683827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 38671672 - 38671609
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttataata 65  Q
    ||||| |||||||||||||||||||| | ||||||| ||||||| ||||||||||| | ||||||    
T  38671672 agagagaaaattgtcacaaaaattat-aaaaaatggttgttcaaatatcatttctcataataata 38671609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 1280150 - 1280208
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttataatat 66  Q
    |||||||||||||||||||||||||||| ||| ||||| ||| ||||||| ||| |||||    
T  1280150 aaaattgtcacaaaaattatcataaaatagatattcaaatat-atttctctttaaaatat 1280208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3648634 - 3648591
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaa 44  Q
    ||||| ||||||||||||||| |||||||||||||| |||||||    
T  3648634 agagagaaaattgtcacaaaagttatcataaaatggttgttcaa 3648591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10811190 - 10811135
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| || ||||||||||| ||||||| |||||||||||    
T  10811190 agagagaaagttgtcacaaaagttgtcataaaatggttgttcaaatatcatttctc 10811135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 18741166 - 18741119
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttc 54  Q
    |||||||| ||||||||||||| ||||| ||||||||| |||||||||    
T  18741166 aaaattgttacaaaaattatcaaaaaattgatgttcaaatatcatttc 18741119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 27168698 - 27168753
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||||||||||||||| | ||||||| ||||||| |||||||||||    
T  27168698 agagagaaagttgtcacaaaaattattaaaaaatggttgttcaaatatcatttctc 27168753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37057074 - 37057129
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| |||||||||| ||||||||||| ||||||| ||||||| ||| |||||||    
T  37057074 agagagaaaattgtcataaaaattatcaaaaaatggttgttcaaatattatttctc 37057129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 43905028 - 43904973
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||| |||||||||||||  |||||||||||||| |||||||||||    
T  43905028 agagagaaagttgttacaaaaattatcactaaatggatgttcaaatatcatttctc 43904973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 49417630 - 49417575
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| || ||||||||| ||||||||| |||||||||||    
T  49417630 agagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctc 49417575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 8839869 - 8839907
Alignment:
Q  17 caaaaattatcataaaatggatgttcaagtatcatttct 55  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  8839869 caaaaattttcataaaatggatgttcaaatatcatttct 8839907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 20080128 - 20080074
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttct 55  Q
    ||||| ||| |||||||||||||| |||| |||||||||||||| || |||||||    
T  20080128 agagagaaagttgtcacaaaaattgtcattaaatggatgttcaaataccatttct 20080074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 20549416 - 20549465
Alignment:
Q  16 acaaaaattatcataaaatggatgttcaagtatcatttctccttataatat 66  Q
    ||||||||||||||||||| ||||| ||| |||||||||| ||||||||||    
T  20549416 acaaaaattatcataaaatagatgtacaaatatcatttct-cttataatat 20549465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 23183657 - 23183607
Alignment:
Q  6 taaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||| ||| ||||||| |||||||||| ||| |||||||||||    
T  23183657 taaaattgtcaccaaagttatcattaaatggatgtacaaatatcatttctc 23183607  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 28539763 - 28539816
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttat 61  Q
    |||||||||||||||||||| | ||||| | ||||||| ||||||||||||||||    
T  28539763 aaaattgtcacaaaaattat-aaaaaatagttgttcaaatatcatttctccttat 28539816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29634088 - 29634142
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttct 55  Q
    ||||| ||||||||  ||||| ||||||| |||||||||||||| ||||||||||    
T  29634088 agagagaaaattgttgcaaaagttatcattaaatggatgttcaaatatcatttct 29634142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 35756022 - 35755984
Alignment:
Q  18 aaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  35756022 aaaaattatcataaaatggttgttcaaatatcatttctc 35755984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 1337861 - 1337898
Alignment:
Q  19 aaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  1337861 aaaattgtcataaaatggatgttcaaatatcatttctc 1337898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 3347154 - 3347194
Alignment:
Q  17 caaaaattatcataaaatggatgttcaagtatcatttctcc 57  Q
    ||||| |||||| ||||||||||||||| ||||||||||||    
T  3347154 caaaagttatcacaaaatggatgttcaaatatcatttctcc 3347194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 49167805 - 49167753
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcattt 53  Q
    ||||| ||| ||||||||||| || |||| |||||||||||||| ||||||||    
T  49167805 agagagaaagttgtcacaaaagttgtcatcaaatggatgttcaaatatcattt 49167753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 9634452 - 9634507
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  9634452 agagaaaaagttgtcacaaaaattatcataaaatggatgttcaaatatcatttctc 9634507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 15269906 - 15269856
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttat 61  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  15269906 ttgtcacaaaaattgtcataaaatggatgttcaaatatcatttctccttat 15269856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 30546385 - 30546440
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||    
T  30546385 agagagaaaattgtcacaaaaattatcattaaatggatattcaaatatcatttctc 30546440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 37105686 - 37105644
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcattt 53  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  37105686 ttgtcacaaaaattatcataaaatggatgttcaaatatcattt 37105644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13765455 - 13765398
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctcct 58  Q
    ||||| ||| ||||||||||| || ||||||||||||||||||| |||||||||||||    
T  13765455 agagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctcct 13765398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 36517241 - 36517196
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||    
T  36517241 ttgtcacaaaaattatcataaaatagatgttcaaatatcatttctc 36517196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1416055 - 1416110
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||||||||||||||||||||||||||||| || || || |||||||||||    
T  1416055 agagaaaaaattgtcacaaaaattatcataaaatgaatatttaaatatcatttctc 1416110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 6999084 - 6999139
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| || ||||||||||||||||||| |||||||||||    
T  6999084 agagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 6999139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18723649 - 18723591
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctcctt 59  Q
    ||||| ||| |||| ||||||||| ||| ||||||||||||||| ||||||||||||||    
T  18723649 agagagaaagttgtaacaaaaattgtcacaaaatggatgttcaaatatcatttctcctt 18723591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 32869871 - 32869829
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcattt 53  Q
    ||||||||||||||||||||||||| |||||||| ||||||||    
T  32869871 ttgtcacaaaaattatcataaaatgaatgttcaaatatcattt 32869829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 4061985 - 4062030
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||| |||| |||||||||||||| |||||||||||    
T  4061985 ttgtcacaaaaattgtcattaaatggatgttcaaatatcatttctc 4062030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 25881599 - 25881538
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttata 62  Q
    ||||| ||| |||||||||||||| ||  ||||| ||||||||| |||||||||||||||||    
T  25881599 agagagaaagttgtcacaaaaattgtcgcaaaatagatgttcaaatatcatttctccttata 25881538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 38821415 - 38821366
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||||||| || ||||||||||| ||||||| |||||||||||    
T  38821415 aaaattgtcacaaaagttgtcataaaatggttgttcaaatatcatttctc 38821366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2563759 - 2563707
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcattt 53  Q
    ||||| ||| ||||||||||| || ||||||||||||||||||| ||||||||    
T  2563759 agagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 2563707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 6170685 - 6170630
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| || |||||||||||||||| || |||||||||||    
T  6170685 agagagaaagttgtcacaaaagttgtcataaaatggatgttgaaatatcatttctc 6170630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 8427607 - 8427552
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||||||||||||| ||| ||||| ||||||||| |||||||||||    
T  8427607 agagagaaagttgtcacaaaaattgtcaaaaaatagatgttcaaatatcatttctc 8427552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12784415 - 12784470
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||||||||||||||| ||||||||| ||| ||| |||||||||||    
T  12784415 agagagaaagttgtcacaaaaattattataaaatggttgtacaaatatcatttctc 12784470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7648446 - 7648385
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttataa 63  Q
    ||||| ||| |||||||||||||| ||| ||| ||||||||||| ||||||||||| ||||||    
T  7648446 agagaaaaagttgtcacaaaaattgtcacaaa-tggatgttcaaatatcatttctctttataa 7648385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 22526020 - 22526062
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcattt 53  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||    
T  22526020 ttgtcacaaaaattgtcaaaaaatggatgttcaaatatcattt 22526062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 22620240 - 22620202
Alignment:
Q  18 aaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  22620240 aaaaattatcacaaaatggatgttcaaatatcatttctc 22620202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 37077842 - 37077792
Alignment:
Q  3 agataaaattgtcacaaaaattatcataaaatggatgttcaagtatcattt 53  Q
    |||||||||||| ||||||||||||| ||||| | ||||||| ||||||||    
T  37077842 agataaaattgttacaaaaattatcaaaaaatagttgttcaaatatcattt 37077792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 40504279 - 40504217
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttataa 63  Q
    ||||| ||| ||||||||| | || ||||||||||| ||||||| ||||||||||| ||||||    
T  40504279 agagagaaatttgtcacaacagttgtcataaaatggttgttcaaatatcatttctctttataa 40504217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 14233735 - 14233788
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttc 54  Q
    ||||| ||| ||||||||||| || ||| ||||||||||||||| |||||||||    
T  14233735 agagagaaatttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttc 14233788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 38911948 - 38911997
Alignment:
Q  3 agataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatt 52  Q
    ||||||| |||||||||||| ||||| ||||||| ||||||| |||||||    
T  38911948 agataaagttgtcacaaaaaatatcaaaaaatggttgttcaaatatcatt 38911997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 44050060 - 44050015
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||| || ||||||||||| ||| |||||||||||||||    
T  44050060 ttgtcacaaaagttgtcataaaatggttgtacaagtatcatttctc 44050015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 18508118 - 18508078
Alignment:
Q  16 acaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||| |||||||||||||||||| ||| |||||||||||    
T  18508118 acaaaagttatcataaaatggatgtacaaatatcatttctc 18508078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 41659372 - 41659422
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctcc 57  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  41659372 aaaattgtcacaaaaattatcattaaatggatgttcaaatatcatttctcc 41659422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 12783821 - 12783766
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||| |||||||||||||| |||| |||||||||||||| |||||||||||    
T  12783821 agagataaagttgtcacaaaaattgtcattaaatggatgttcaaatatcatttctc 12783766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 43397611 - 43397556
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||||||||||||||| | ||| ||||||||||| |||||||||||    
T  43397611 agagataaaattgtcacaaaaattataacaaagtggatgttcaaatatcatttctc 43397556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 31596993 - 31596948
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||    
T  31596993 ttgtcacaaaaattgtcataaaatggatgttcaaatatcatttctc 31596948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4658279 - 4658334
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| || ||||||||||||||||||| |||||||||||    
T  4658279 agagaaaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 4658334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 8645220 - 8645165
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||||||||| ||||||||||||  |||||||||||||| |||||||||||    
T  8645220 agagagaaaattgtcccaaaaattatcaccaaatggatgttcaaatatcatttctc 8645165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 9208121 - 9208066
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||| || |||||||||||||| |||| |||||||||||||| |||||||||||    
T  9208121 agagatgaagttgtcacaaaaattgtcattaaatggatgttcaaatatcatttctc 9208066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22960433 - 22960488
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||||||| |||||||| |||||||| ||| ||| |||||||||||    
T  22960433 agagataaaattgtcacagaaattatcctaaaatggttgtacaaatatcatttctc 22960488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 7375801 - 7375850
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||| |||||| ||||||||||||||||||| || |||||||||||    
T  7375801 aaaattgtaacaaaagttatcataaaatggatgtttaaatatcatttctc 7375850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9549215 - 9549267
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcattt 53  Q
    ||||| ||||||||||||||| || ||| ||||||||||||||| ||||||||    
T  9549215 agagagaaaattgtcacaaaagttgtcacaaaatggatgttcaaatatcattt 9549267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3946295 - 3946240
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| || ||| ||||||||||||||| |||||||||||    
T  3946295 agagagaaagttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttctc 3946240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5601003 - 5601058
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||||||||||||||| || ||| ||||||| ||||||| |||||||||||    
T  5601003 agagaaaaaattgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 5601058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5639617 - 5639562
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||||||||||||||| || ||| ||||||| ||||||| |||||||||||    
T  5639617 agagaaaaaattgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 5639562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 12707204 - 12707149
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||| ||||| || ||||||||||||||||||| |||||||||||    
T  12707204 agagagaaagttgtcgcaaaagttgtcataaaatggatgttcaaatatcatttctc 12707149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28756590 - 28756535
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||||||||||||||| ||||||||  ||  ||| |||||||||||    
T  28756590 agagataaaattgtcacaaaaattattataaaatgattgcacaaatatcatttctc 28756535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 33605094 - 33605149
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||||||||  ||||| |||||||||||||| ||||||| |||||||||||    
T  33605094 agagagaaaattgttccaaaagttatcataaaatggttgttcaaatatcatttctc 33605149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28756716 - 28756682
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatg 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  28756716 agagataaaattgtcacaaaaattattataaaatg 28756682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 44061772 - 44061718
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttct 55  Q
    ||||| ||| ||||||||||| |||||| ||||||| ||||||| ||||||||||    
T  44061772 agagagaaagttgtcacaaaagttatcaaaaaatggttgttcaaatatcatttct 44061718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 3206396 - 3206355
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatt 52  Q
    ||||||||||||||||||| |||||| ||||||| |||||||    
T  3206396 ttgtcacaaaaattatcatcaaatggttgttcaaatatcatt 3206355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 4312589 - 4312548
Alignment:
Q  15 cacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||||||||| | ||||||| |||||||||||    
T  4312589 cacaaaaattatcataaaatagttgttcaaatatcatttctc 4312548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 9314451 - 9314410
Alignment:
Q  16 acaaaaattatcataaaatggatgttcaagtatcatttctcc 57  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||    
T  9314451 acaaaaattgtcataaaatggatgtacaaatatcatttctcc 9314410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 24479284 - 24479236
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||||||| |||||| ||||||| ||||||| |||||||||||    
T  24479284 aaaattgtcacaaaagttatca-aaaatggttgttcaaatatcatttctc 24479236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 37792187 - 37792236
Alignment:
Q  9 aattgtcacaaaaattatcataaaatggatgttcaagtatcatttctcct 58  Q
    |||||||||||||||||||  ||| ||| ||||||| |||||||||||||    
T  37792187 aattgtcacaaaaattatctaaaagtggttgttcaaatatcatttctcct 37792236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 38708318 - 38708367
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||| |||||||||||||  |||| ||||||||| |||||||||||    
T  38708318 aaaattgttacaaaaattatcaccaaatagatgttcaaatatcatttctc 38708367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 20852957 - 20852917
Alignment:
Q  18 aaaaattatcataaaatggatgttcaagtatcatttctcct 58  Q
    ||||||||||||||||||| ||| ||| |||||||||||||    
T  20852957 aaaaattatcataaaatggttgtacaaatatcatttctcct 20852917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 45529262 - 45529322
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttat 61  Q
    ||||| ||| |||| ||||||||| |||  ||||| |||||||| ||||||||||||||||    
T  45529262 agagagaaagttgttacaaaaattgtcactaaatgaatgttcaaatatcatttctccttat 45529322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 35586789 - 35586849
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttat 61  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  35586789 agagagaaagttgtcacaaaagttatcataaaatggatgttcaaatatcatttctctttat 35586849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 35452589 - 35452644
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  35452589 agagagaaagttgtcacaaaaattatcaccaaatggatgttcaagtatcatttctc 35452644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3343346 - 3343400
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttct 55  Q
    ||||| |||||||||||||||||| |||||||||| |||||||| ||||||||||    
T  3343346 agagagaaaattgtcacaaaaattgtcataaaatgaatgttcaaatatcatttct 3343400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8904423 - 8904478
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| |||||||||||||||||||||| |||| || ||||||| |||||||||||    
T  8904423 agagagaaaattgtcacaaaaattatcacaaaacggttgttcaaatatcatttctc 8904478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 18111628 - 18111683
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| |||||||||||||||||||| ||||||||| |||  ||||||||||||||    
T  18111628 agagagaaaattgtcacaaaaattattataaaatggttgtagaagtatcatttctc 18111683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37899229 - 37899284
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||||||||||||| ||| ||||||||||||||| |||||||||||    
T  37899229 agagagaaagttgtcacaaaaattgtcacaaaatggatgttcaaatatcatttctc 37899284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 37899378 - 37899323
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||| ||||||||||| || ||| ||||||||||||||| |||||||||||    
T  37899378 agagataaagttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttctc 37899323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 41893960 - 41893915
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||| || ||||||||||||||||||| |||||||||||    
T  41893960 ttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 41893915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24532959 - 24533011
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcattt 53  Q
    ||||| |||||||||||||||||||||| ||||| | ||||||| ||||||||    
T  24532959 agagaaaaaattgtcacaaaaattatcagaaaatagttgttcaaatatcattt 24533011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8920865 - 8920920
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||||| |||| ||||||| |||||||||||||| |||||||||||    
T  8920865 agagagaaagttgtcaaaaaagttatcattaaatggatgttcaaatatcatttctc 8920920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 37352165 - 37352110
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| |||||| ||||||||||| ||| ||||||| ||||||| |||||||||||    
T  37352165 agagaaaaaattatcacaaaaattgtcaaaaaatggttgttcaaatatcatttctc 37352110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 46880957 - 46880902
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| |||||| || |||||||||||| ||||||| ||||||| |||||||||||    
T  46880957 agagagaaaattatcgcaaaaattatcaaaaaatggttgttcaaatatcatttctc 46880902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 47012586 - 47012641
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||||||||||||||| | ||||||  ||| ||| |||||||||||    
T  47012586 agagataaaattgtcacaaaaattattagaaaatgattgtacaaatatcatttctc 47012641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 22638910 - 22638955
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||| || ||||||||| ||||||||| |||||||||||    
T  22638910 ttgtcacaaaagttgtcataaaatagatgttcaaatatcatttctc 22638955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 39823864 - 39823807
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctcct 58  Q
    ||||| ||| |||||| |||||||||||  ||||| |||||||| |||||||||||||    
T  39823864 agagaaaaagttgtcataaaaattatcaccaaatgaatgttcaaatatcatttctcct 39823807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 13139203 - 13139148
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||| |||||||||||    
T  13139203 agagagaaagttgtcataaaaattatcataaaatggatgttcaaatatcatttctc 13139148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 56271414 - 56271360
Alignment:
Q  2 gagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||    
T  56271414 gagaaaaagttgtcacaaaagttatcataaaatggatgttcaaatatcatttctc 56271360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 1816018 - 1816071
Alignment:
Q  3 agataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||||||||||| ||| ||||| ||||||||| |||||||||||    
T  1816018 agataaaattgtcacaaaaattgtcacaaaatagatgttcaaatatcatttctc 1816071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 2999157 - 2999112
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||    
T  2999157 ttgtcacaaaaattgtcataaaatggatgttcaaatatcatttctc 2999112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 53654776 - 53654821
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||    
T  53654776 ttgtcacaaaaattatcataaaatagatgttcaaatatcatttctc 53654821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12595647 - 12595702
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| |||||| | ||||||||||||| ||||||||||||||| |||||||||||    
T  12595647 agagagaaaattatgacaaaaattatcaaaaaatggatgttcaaatatcatttctc 12595702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 2401665 - 2401611
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttct 55  Q
    ||||||||| ||||||||||| || ||| ||||||||||||||| ||||||||||    
T  2401665 agagataaagttgtcacaaaagttgtcacaaaatggatgttcaaatatcatttct 2401611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33860702 - 33860644
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctcctt 59  Q
    ||||| ||| |||||||||||||| |||  |||||||||||||| ||||||||||||||    
T  33860702 agagagaaagttgtcacaaaaattgtcaccaaatggatgttcaaatatcatttctcctt 33860644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 39158160 - 39158097
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttataata 65  Q
    ||||| ||| |||||||||||||||||| ||||||  ||||||| |||||||||| |||||||||    
T  39158160 agagagaaagttgtcacaaaaattatcaaaaaatgattgttcaaatatcatttct-cttataata 39158097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4915689 - 4915744
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||||| ||||||| ||| ||||||||||||||| |||||||||||    
T  4915689 agagagaaagttgtcataaaaattgtcacaaaatggatgttcaaatatcatttctc 4915744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 6494909 - 6494964
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||| ||||||||  |||||||||||||| |||||||||||    
T  6494909 agagagaaagttgtcacaataattatcaccaaatggatgttcaaatatcatttctc 6494964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7627903 - 7627848
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| |||||| |||||||||||||||| ||||| || ||||| |||||||||||    
T  7627903 agagagaaaattatcacaaaaattatcattaaatgaatattcaaatatcatttctc 7627848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 21617238 - 21617183
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||| ||||||||| ||| ||||||||||||||| |||||||||||    
T  21617238 agagagaaagttgtaacaaaaattgtcacaaaatggatgttcaaatatcatttctc 21617183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 26206993 - 26207048
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||||||||  ||||||||||||  |||||||||||||| |||||||||||    
T  26206993 agagagaaaattgttgcaaaaattatcactaaatggatgttcaaatatcatttctc 26207048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 40609665 - 40609610
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| ||||||| |||||||||||||| ||| |||||||    
T  40609665 agagagaaagttgtcacaaaagttatcattaaatggatgttcaaatatgatttctc 40609610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 44626660 - 44626605
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||| || |||||||| |||||||||||| | ||||||| |||||||||||    
T  44626660 agagataaagttatcacaaaagttatcataaaatagttgttcaaatatcatttctc 44626605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 50506448 - 50506393
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| |||||| || |||||||||||| ||||||| ||||||| |||||||||||    
T  50506448 agagagaaaattatctcaaaaattatcaaaaaatggttgttcaaatatcatttctc 50506393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 51225541 - 51225596
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||||| ||||||||||| ||||| ||||||||| |||||||||||    
T  51225541 agagagaaagttgtcataaaaattatcacaaaatagatgttcaaatatcatttctc 51225596  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 56557788 - 56557733
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||||||||||||||| || ||||||||| | ||||||| |||||||||||    
T  56557788 agagagaaaattgtcacaaaagttgtcataaaattgttgttcaaatatcatttctc 56557733  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 40721996 - 40722038
Alignment:
Q  17 caaaaattatcataaaatggatgttcaagtatcatttctcctt 59  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||    
T  40721996 caaaaattattataaaatggatgtacaaatatcatttctcctt 40722038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 9362704 - 9362749
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||| || |||| |||||||||||||| |||||||||||    
T  9362704 ttgtcacaaaagttgtcattaaatggatgttcaaatatcatttctc 9362749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 12705154 - 12705125
Alignment:
Q  30 aaaatggatgttcaagtatcatttctcctt 59  Q
    ||||||||||||||||||||||||||||||    
T  12705154 aaaatggatgttcaagtatcatttctcctt 12705125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 26718417 - 26718380
Alignment:
Q  19 aaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  26718417 aaaattgtcataaaatggatgttcaaatatcatttctc 26718380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 26731045 - 26731008
Alignment:
Q  19 aaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  26731045 aaaattgtcataaaatggatgttcaaatatcatttctc 26731008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32130252 - 32130305
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttc 54  Q
    ||||| || ||| ||||||||||||||| ||||||| ||||||| |||||||||    
T  32130252 agagaaaatattatcacaaaaattatcaaaaaatggttgttcaaatatcatttc 32130305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 45851805 - 45851760
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||| ||||||||| ||||||||| ||||||||| |||||||||||    
T  45851805 ttgtaacaaaaattgtcataaaattgatgttcaaatatcatttctc 45851760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 30170036 - 30170092
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctcc 57  Q
    ||||| ||| ||||||||||| || ||||||||| ||||||||| ||| ||||||||    
T  30170036 agagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatataatttctcc 30170092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 38519848 - 38519796
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcattt 53  Q
    ||||| ||| |||||||||||||| ||| ||||||| ||||||| ||||||||    
T  38519848 agagagaaagttgtcacaaaaattgtcaaaaaatggttgttcaaatatcattt 38519796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 38715303 - 38715251
Alignment:
Q  2 gagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttc 54  Q
    |||| ||||||||||||||||||||||  ||||  |||||||| |||||||||    
T  38715303 gagagaaaattgtcacaaaaattatcaccaaataaatgttcaaatatcatttc 38715251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 51255801 - 51255738
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttataata 65  Q
    ||||| ||| ||||||||||| || ||| ||||||| ||||||| |||||||||| |||||||||    
T  51255801 agagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcatttct-cttataata 51255738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 52895282 - 52895230
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcattt 53  Q
    ||||||||| |||||||||||||| |||| |||||| ||| ||| ||||||||    
T  52895282 agagataaagttgtcacaaaaattgtcatgaaatggttgtacaaatatcattt 52895230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1956 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1956
Description:

Target: scaffold1956; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 825 - 771
Alignment:
Q  2 gagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||| ||| |||||||||||||||||| ||||||||||||||| |||||||||||    
T  825 gagagaaagttgtcacaaaaattatcaaaaaatggatgttcaaatatcatttctc 771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 23628409 - 23628351
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttataata 65  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||||| | ||||||    
T  23628409 aaaattgtcacaaaaattatcattaaatggatattcaaatatcatttctcataataata 23628351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2689080 - 2689135
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||||||||||||| |||| |||||||||||||| |||||||||||    
T  2689080 agagagaaagttgtcacaaaaattgtcattaaatggatgttcaaatatcatttctc 2689135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 20822884 - 20822939
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| || ||||||||||||||||||| |||||||||||    
T  20822884 agagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 20822939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 32459533 - 32459588
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| ||||||||||| || ||||||||||||||||||| |||||||||||    
T  32459533 agagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctc 32459588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5522654 - 5522706
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcattt 53  Q
    ||||||||| |||||||||||||||||| || ||| |||||||| ||||||||    
T  5522654 agagataaagttgtcacaaaaattatcaaaagatgaatgttcaaatatcattt 5522706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 17182154 - 17182098
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctcc 57  Q
    ||||| |||||||||||||||||||||| ||||| | |||| || ||||||||||||    
T  17182154 agagagaaaattgtcacaaaaattatcaaaaaatagttgttaaaatatcatttctcc 17182098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 33651075 - 33651020
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||| ||| |||||||||||||||| | ||||| ||||||||| |||||||||||    
T  33651075 agagagaaagttgtcacaaaaattattacaaaatagatgttcaaatatcatttctc 33651020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 34037021 - 34036979
Alignment:
Q  14 tcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||||||||||||||  |||||||||||||| |||||||||||    
T  34037021 tcacaaaaattatcaccaaatggatgttcaaatatcatttctc 34036979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 21393603 - 21393648
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    |||| ||||||||| ||||||||||| ||||||| |||||||||||    
T  21393603 ttgttacaaaaattctcataaaatggttgttcaactatcatttctc 21393648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 34442079 - 34442140
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttata 62  Q
    ||||| ||||||||||||||| || ||||||||| | || |||| ||||||||||| |||||    
T  34442079 agagagaaaattgtcacaaaagttgtcataaaatagttgctcaaatatcatttctctttata 34442140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15318204 - 15318264
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttat 61  Q
    ||||| ||| |||| |||||| || ||| ||||||||||||||| ||||||||||| ||||    
T  15318204 agagagaaagttgtaacaaaagttgtcacaaaatggatgttcaaatatcatttctctttat 15318264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11987 - 11934
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||||||||||||| ||  |||||||||||||||||| |||||||||||    
T  11987 agagataaaattgtcacaaaagtt--cataaaatggatgttcaaatatcatttctc 11934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 26470 - 26421
Alignment:
Q  7 aaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||||||| ||||||||||| || |||| || |||||||||||    
T  26470 aaaattgtcacaaaagttatcataaaacggttgtttaaatatcatttctc 26421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 44792 - 44837
Alignment:
Q  11 ttgtcacaaaaattatcataaaatggatgttcaagtatcatttctc 56  Q
    ||||||||||| |||| | ||||||| |||||||||||||||||||    
T  44792 ttgtcacaaaagttataaaaaaatggttgttcaagtatcatttctc 44837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 28343 - 28403
Alignment:
Q  1 agagataaaattgtcacaaaaattatcataaaatggatgttcaagtatcatttctccttat 61  Q
    ||||| ||| ||||||||||| |||||| ||| ||| ||||||| ||||||||||| ||||    
T  28343 agagagaaagttgtcacaaaagttatcaaaaagtggttgttcaaatatcatttctctttat 28403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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