View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_high_3 (Length: 567)
Name: NF10441_high_3
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 16 - 551
Target Start/End: Original strand, 595442 - 595977
Alignment:
| Q |
16 |
gagcagagaaacagaaacaaataaaaaagaaggatgcaaatttagtacataacaggacaaggggaataatacataggctttgttattgctcaaactaatt |
115 |
Q |
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| T |
595442 |
gagcagagaaacagaaacaaataaaaaagaaggatgcaaatttagtacataacaggacaaggggaataatacataggctttgttattgttcaaactaatt |
595541 |
T |
|
| Q |
116 |
ttagtactattttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595542 |
ttagtactattttaccaatcatagcaaaaatggattactgtcttgattgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtc |
595641 |
T |
|
| Q |
216 |
tactttagtttctacgtctattgataatgtgattatgaatattcaattgaattaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595642 |
tactttagtttctacgtctattgataatgtgattatgaatattcaattgaattaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaa |
595741 |
T |
|
| Q |
316 |
ggtagcagcttttggtgttcaatatcaatcaaatcttccttttcgctctttacannnnnnnggtaaacaaatctcattctttatgattagtcaaagaaaa |
415 |
Q |
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| T |
595742 |
ggtagcagcttttggtgttcaatatcaatcaaatcttccttttcgctctttacatttttttggtaaacaaatctcattctttatgattagtcaaagaaaa |
595841 |
T |
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| Q |
416 |
agatcttgttctttatgatattaaagctaaatggaggcatttcaagcggacaaatggaggnnnnnnnnaatcgatattcaaatggatgcttataacaaca |
515 |
Q |
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| T |
595842 |
agatcttgttctttatgatattaaagctaaatggaggcatttcaagcggacaaatggaggttttttttaatcgatattcaaatggatgcttataacaaca |
595941 |
T |
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| Q |
516 |
aatgattgtaaaattcatattcatggtagttattat |
551 |
Q |
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| T |
595942 |
aatgattgtaaaattcatattcatggtagttattat |
595977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 267 - 352
Target Start/End: Complemental strand, 23962413 - 23962328
Alignment:
| Q |
267 |
ttaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaaggtagcagcttttggtgttcaatatcaatcaaatctt |
352 |
Q |
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| T |
23962413 |
ttaaaggtatgtcattgtcttttcgtgcggtgttggaaacttcttcgaaggtagtagcttttgatgttcaatatcaatcaagtctt |
23962328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 377 - 551
Target Start/End: Original strand, 17373398 - 17373572
Alignment:
| Q |
377 |
ggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaaagctaaatggaggcatttcaagcggacaaatggaggn |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
17373398 |
ggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaaagctaaatggaagcatttcaagtagacaaatggaggt |
17373497 |
T |
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| Q |
477 |
nnnnnnnaatcgatattcaaatggatgcttataacaacaaatgattgtaaaattcatattcatggtagttattat |
551 |
Q |
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| T |
17373498 |
tttttttaatcgatattcaaatggatgcttatagcaacaaatgattgtaaaattcatattcatggtagttattat |
17373572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 4590038 - 4590129
Alignment:
| Q |
126 |
tttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgtcta |
217 |
Q |
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| T |
4590038 |
tttaccaatcatagcagaaataaattcctgtcctgaatgctttacttgtttttagtttgttgacagaccagggagaattcgagagtcgtcta |
4590129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 489 - 551
Target Start/End: Complemental strand, 33006051 - 33005992
Alignment:
| Q |
489 |
atattcaaatggatgcttataacaacaaatgattgtaaaattcatattcatggtagttattat |
551 |
Q |
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| T |
33006051 |
atattcaaatggatgcttataacaacaaatgattgtaaaattca---tcatggtagttattat |
33005992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 380 - 439
Target Start/End: Complemental strand, 33006205 - 33006147
Alignment:
| Q |
380 |
aaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaa |
439 |
Q |
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| T |
33006205 |
aaacaaatctcatt-tttatgattagtcaaagaaaaagatctcgttctttatgatattaa |
33006147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 4603679 - 4603770
Alignment:
| Q |
123 |
tattttaccaatcatagcaaaaatggattactgtcttgaatgctttgcttgattttagtttgttgacagagcagtgagaattcaagagtcgt |
214 |
Q |
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||||||||||||||||||| || | |||||| || |||||||||| |||| ||||| ||||| ||||| |||||||||||| ||| |||| |
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| T |
4603679 |
tattttaccaatcatagcagaattaaattactatcctgaatgctttacttgtttttaatttgtcgacaggtcagtgagaattcgagaatcgt |
4603770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 7632928 - 7632866
Alignment:
| Q |
484 |
aatcgatattcaaatggatgcttataacaacaaatgattgtaaaattcatattcatggtagttatt |
549 |
Q |
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| T |
7632928 |
aatcgattttcaaatggttgcttatgacaa---atgattgtaaaattcatattcatggtggttatt |
7632866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 439
Target Start/End: Complemental strand, 7633083 - 7633021
Alignment:
| Q |
377 |
ggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaa |
439 |
Q |
| |
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|||||||||||| ||| ||||||||||||| ||| |||| |||| ||||||||||||||||| |
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| T |
7633083 |
ggtaaacaaatcccatactttatgattagtaaaaataaaaaatctcgttctttatgatattaa |
7633021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 513 - 559
Target Start/End: Original strand, 15290410 - 15290456
Alignment:
| Q |
513 |
acaaatgattgtaaaattcatattcatggtagttattattgatgatg |
559 |
Q |
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| T |
15290410 |
acaaatgattgtaaaattcatattcatggtagtttttttttatgatg |
15290456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 381 - 439
Target Start/End: Original strand, 15290245 - 15290303
Alignment:
| Q |
381 |
aacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaa |
439 |
Q |
| |
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||||||||||||||||||| |||||| ||| ||||| || ||||||||||||||||| |
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| T |
15290245 |
aacaaatctcattctttatcattagtaaaaaaaaaaatactcgttctttatgatattaa |
15290303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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