View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_high_38 (Length: 228)

Name: NF10441_high_38
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_high_38
NF10441_high_38
[»] chr4 (4 HSPs)
chr4 (1-228)||(23903880-23904125)
chr4 (1-228)||(23922859-23923104)
chr4 (87-164)||(23913025-23913102)
chr4 (1-51)||(23913183-23913233)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 23903880 - 23904125
Alignment:
Q  1 atgatccacttagcttacaaatcacagaaaaatcattccatgatgctctttcccctaatggcacaaccagcaccagttgcaatagtaatagtaacagcag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23903880 atgatccacttagcttacaaatcacagaaaaatcattccatgatgctctttcacctaatggcacaaccagcaccagttgcaatagtaatagtaacagcag 23903979  T
Q  101 catcgacgattctcacgagtcgaaacccttttcacctgatactcctgtttctgatcttg------------------ttaattcctgtgcttcaagtagt 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||    
T  23903980 catcgacgattctcacgagtcgaaacccttttcacctgatactcctgtttctgatcttgttaatcatggttttcagtttaattcctgtgcttcaagtagt 23904079  T
Q  183 gttagtgatggactcgtaaatttcgattcatctattaccaatatgt 228  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||    
T  23904080 gttagtgatggacccataaatttcgattcatctattaccaatatgt 23904125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 23923104 - 23922859
Alignment:
Q  1 atgatccacttagcttacaaatcacagaaaaatcattccatgatgctctttcccctaatggcacaaccagcaccagttgcaatagtaatagtaacagcag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23923104 atgatccacttagcttacaaatcacagaaaaatcattccatgatgctctttcacctaatggcacaaccagcaccagttgcaatagtaatagtaacagcag 23923005  T
Q  101 catcgacgattctcacgagtcgaaacccttttcacctgatactcctgtttctgatcttgt------------------taattcctgtgcttcaagtagt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||    
T  23923004 catcgacgattctcacgagtcgaaacccttttcacctgatactcctgtttctgatcttgttaatcatggttttcagtttaattcctgtgcttcaagtagt 23922905  T
Q  183 gttagtgatggactcgtaaatttcgattcatctattaccaatatgt 228  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||    
T  23922904 gttagtgatggacccataaatttcgattcatctattaccaatatgt 23922859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 23913102 - 23913025
Alignment:
Q  87 aatagtaacagcagcatcgacgattctcacgagtcgaaacccttttcacctgatactcctgtttctgatcttgttaat 164  Q
    ||||| || |||||| ||||||||||||  ||||| |||||| ||||||||||||||||||||||||||| |||||||    
T  23913102 aatagcaatagcagcgtcgacgattctcgagagtcaaaacccctttcacctgatactcctgtttctgatcatgttaat 23913025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23913233 - 23913183
Alignment:
Q  1 atgatccacttagcttacaaatcacagaaaaatcattccatgatgctcttt 51  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  23913233 atgacccacttagcttacaaatgacagaaaaatcattctatgatgctcttt 23913183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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