View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_high_4 (Length: 500)

Name: NF10441_high_4
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_high_4
NF10441_high_4
[»] chr3 (15 HSPs)
chr3 (17-292)||(5455428-5455705)
chr3 (20-292)||(5446869-5447143)
chr3 (304-493)||(5456409-5456598)
chr3 (19-287)||(5503420-5503690)
chr3 (21-292)||(5485188-5485461)
chr3 (19-292)||(5490607-5490882)
chr3 (66-292)||(5853575-5853803)
chr3 (21-292)||(5526262-5526535)
chr3 (316-493)||(5447871-5448034)
chr3 (56-287)||(5827550-5827783)
chr3 (169-292)||(5801871-5801994)
chr3 (445-493)||(5495632-5495680)
chr3 (35-216)||(5848350-5848533)
chr3 (194-287)||(20344215-20344308)
chr3 (21-158)||(5802013-5802150)
[»] chr6 (1 HSPs)
chr6 (20-292)||(25808669-25808943)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 5455428 - 5455705
Alignment:
17 attctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatattcgtaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
5455428 attctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagtaccactctagtaataattgaactgttcaaggtttcatattcgtaa 5455527  T
117 gagatttctttgtcagtgaacattactgagaaattcaagactc--tgcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5455528 gagatttctttgtcagtgaacattactgagaaattcaagactctatgcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctc 5455627  T
215 tatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactctcctt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
5455628 tatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactcacctt 5455705  T

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Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 5446869 - 5447143
Alignment:
20 ctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatattcgtaagag 119  Q
    ||||||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||    
5446869 ctgtgtcttatctgtccattgtaagcgttgtgatattccatttgggtctagcacgactctagtaataattgaactgctcaaagtttcatattggtaagag 5446968  T
120 atttctttgtcagtgaacattactgagaaattcaagactct--gcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctctat 217  Q
    ||||||||||||||||| ||||| |||||||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
5446969 atttctttgtcagtgaatattacagagaaattcatgactctatgcactctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctctat 5447068  T
218 acagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactctcctt 292  Q
    |||||| ||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||    
5447069 acagaaatattgccccgtttgcagtaaccagttgaggaaaaccatgtgtatctatcttatacgaacactcacctt 5447143  T

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Target: chr3; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 304 - 493
Target Start/End: Original strand, 5456409 - 5456598
Alignment:
304 tgttgacaaaatgttgactgattcgttttcaagtcaagaccttctagtgttacgtgtaatacggatgatggaattgaaaaggaaagggagagaccaagag 403  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||    
5456409 tgttgacacaatgttgactgattcgttttcaagtcaagaccttctagtgttacgtgtaatacggataatggaattgaaaaggaaagggagagactaaaag 5456508  T
404 tatcaatgttgcaaactttggcggataaattgacaattaccattaggagcttatagttctccattgtgtttgtgtgggttttctctgctt 493  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
5456509 tatcaatgttgcaaactttggtggataaattgacaattaccattaggagcttatagttcttcattgtgtttgtgtgggttttctctgctt 5456598  T

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Target: chr3; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 5503420 - 5503690
Alignment:
19 tctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatattcgtaaga 118  Q
    ||||||||||||||| |||||| |||||||||||   ||||| ||| |||||||||| ||||||| ||||||||||||| || ||||||||||  |||||    
5503420 tctgtgtcctatctgaccattgaaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataaga 5503519  T
119 gatttctttgtcagtgaacattactgagaaattcaagactct--gcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctcta 216  Q
    || ||||||||| ||||  | |||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
5503520 gaattctttgtcggtgactactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctcta 5503619  T
217 tacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactc 287  Q
    |||||||   |||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
5503620 tacagaacctttgctccctttgcagtaaccagttgaggaaaaccatgtgtatctatcttatatgaacactc 5503690  T

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Target: chr3; HSP #5
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 21 - 292
Target Start/End: Original strand, 5485188 - 5485461
Alignment:
21 tgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatattcgtaagaga 120  Q
    ||||||||||||| |||||| ||||||||||| | ||||| ||| |||||||||| ||||||| |||||||||||||||| ||||||||||  |||||||    
5485188 tgtgtcctatctgaccattgaaaacgttgtgacattccatatggatctagcaccaatctagtattaattgaactgttcaaagtttcatattgataagaga 5485287  T
121 tttctttgtcagtgaacattactgagaaattcaagactct--gcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctctata 218  Q
     ||||||||| ||||  | |||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
5485288 attctttgtcggtgactactactgagaaattcaagactctacgcagtctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctata 5485387  T
219 cagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactctcctt 292  Q
     |||| | |||| ||||||| | ||| |||||| |||||||||||| |||||||||||||||||||||| ||||    
5485388 tagaacttttgctccctttgaattaaccagttgaggaaaaccatgtatatctatcttatatgaacactcacctt 5485461  T

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Target: chr3; HSP #6
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 5490607 - 5490882
Alignment:
19 tctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatattcgtaaga 118  Q
    ||||||||||||||| ||||||||||||||||||   ||||| ||| |||||||||| ||||||| ||||||||||||| || ||||||||||  |||||    
5490607 tctgtgtcctatctgaccattgtaaacgttgtgaagttccatatggatctagcaccaatctagtattaattgaactgtttaaagtttcatattgataaga 5490706  T
119 gatttctttgtcagtgaacattactgagaaattcaagactct--gcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctcta 216  Q
    || |||||||||||||| || ||| |||||||||||||||||  ||| |||| ||||||||||||| ||||||||||||||||||||||||||| |||||    
5490707 gaattctttgtcagtgaccactaccgagaaattcaagactctatgcagtcttagccaagaaacaccggtgaaaagaaatccattccatgaccctcctcta 5490806  T
217 tacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactctcctt 292  Q
    |||||||   |||| |||||||||||||  ||||| |||||||||||||||||||||||||| |||||||| ||||    
5490807 tacagaacgtttgctccctttgcagtaactagttgaggaaaaccatgtgtatctatcttatacgaacactcacctt 5490882  T

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Target: chr3; HSP #7
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 66 - 292
Target Start/End: Complemental strand, 5853803 - 5853575
Alignment:
66 tctagcaccactctagtaataattgaactgttcaaggtttcatattcgtaagagatttctttgtcagtgaacattactgagaaattcaagactctg--ca 163  Q
    |||||| ||| ||||||||||||||||| |||||  ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||  ||    
5853803 tctagctccattctagtaataattgaacggttcatagtttcatattgataagagaattctttgtcagtgaacattactgagaaattcaagactctgtgca 5853704  T
164 ttctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | || | |||||| |||||| |||||| |||||||||||    
5853703 ttctttgccaagaaacaccagtgaaaagaaatccattccatgaccctcctctatacaaaaatctttctcccttttcagtaaccagttgaggaaaaccatg 5853604  T
264 tgtatctatcttatatgaacactctcctt 292  Q
      |||||||| ||||||||||||| ||||    
5853603 catatctatcctatatgaacactcacctt 5853575  T

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Target: chr3; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 21 - 292
Target Start/End: Original strand, 5526262 - 5526535
Alignment:
21 tgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatattcgtaagaga 120  Q
    ||||||||||||| |||||| | ||||||||| | ||| ||||  |||||||||| ||||||| |||||||||||||||| ||||||||||  |||||||    
5526262 tgtgtcctatctgaccattgaagacgttgtgaaattccgtttgaatctagcaccagtctagtattaattgaactgttcaaagtttcatattgataagaga 5526361  T
121 tttctttgtcagtgaacattactgagaaattcaagactct--gcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctctata 218  Q
     |||||||||| |||| | |||||||||||||||||||||   ||  |||||||| | |  |||| |||||||||||||||||||||  ||| |||||||    
5526362 cttctttgtcactgaaaactactgagaaattcaagactctagacaaactttgccagggagaaccactgaaaagaaatccattccatggtcctcctctata 5526461  T
219 cagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactctcctt 292  Q
    ||||||| |||| |||||| | |||| |||||| ||||||||||   |||| ||| |||||||| |||| ||||    
5526462 cagaattcttgctccctttactgtaaccagttgaggaaaaccatccatatcgatcctatatgaatactcacctt 5526535  T

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Target: chr3; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 316 - 493
Target Start/End: Original strand, 5447871 - 5448034
Alignment:
316 gttgactgattcgttttcaagtcaagaccttctagtgttacgtgtaatacggatgatggaattgaaaaggaaagggagagaccaagagtatcaatgttgc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||| ||||| |||| |||||| | ||||||||||||    
5447871 gttgactgattcgttttcaagtcaagaccttctagtgttacgtgtaatacggatgactgaaatgaaagggaaaaggagggaccaaaactatcaatgttgc 5447970  T
416 aaactttggcggataaattgacaattaccattaggagcttatagttctccattgtgtttgtgtgggttttctctgctt 493  Q
                  ||||||||||||||||| || | ||||| |||||||||||||||||||||||||||| ||||||    
5447971 --------------aaattgacaattaccatcagcaccttatggttctccattgtgtttgtgtgggttttccctgctt 5448034  T

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Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 287
Target Start/End: Complemental strand, 5827783 - 5827550
Alignment:
56 tccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatattcgtaagagatttctttgtcagtgaacattactgagaaattcaag 155  Q
    ||||| ||| |||||||| | ||||||||| ||||||||||| || ||| ||||||  ||||  | |||||| ||||| ||||| | |||| ||||||||    
5827783 tccatatggatctagcacaaatctagtaatcattgaactgttaaacgttgcatattgataagtaacttctttatcagttaacatgaatgagtaattcaag 5827684  T
156 actct--gcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctctatacagaattattgccccctttgcagtaagcagttggg 253  Q
    |||||  | | | ||||||||||||| ||| ||||| || ||||||||||||||||  |||||||||||||| ||   ||||||||| ||| | |||| |    
5827683 actctatgaactatttgccaagaaactccattgaaatgatatccattccatgacccacctctatacagaattgtttttccctttgcaataacctgttgag 5827584  T
254 gaaaaccatgtgtatctatcttatatgaacactc 287  Q
    |||||||||| ||||||||| |||| ||| ||||    
5827583 gaaaaccatgagtatctatcctatacgaaaactc 5827550  T

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Target: chr3; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 169 - 292
Target Start/End: Complemental strand, 5801994 - 5801871
Alignment:
169 tgccaagaaacaccagtgaaaagaaatccattccatgaccctgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtat 268  Q
    ||||| ||||||| | |||||||||||||||||||||||||| |||||||||||| | |||| |||||||||||||  ||||| ||||||||| |  |||    
5801994 tgccaggaaacactactgaaaagaaatccattccatgaccctcctctatacagaactgttgctccctttgcagtaacaagttgaggaaaaccaggcatat 5801895  T
269 ctatcttatatgaacactctcctt 292  Q
    ||||| ||||||||||||| ||||    
5801894 ctatcctatatgaacactcacctt 5801871  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 445 - 493
Target Start/End: Original strand, 5495632 - 5495680
Alignment:
445 attaggagcttatagttctccattgtgtttgtgtgggttttctctgctt 493  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||    
5495632 attaggagcttatagttctccattgtgtttgtgtaggttttctcagctt 5495680  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 216
Target Start/End: Complemental strand, 5848533 - 5848350
Alignment:
35 ccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatattcgtaagagatttctttgtcagtg 134  Q
    |||||| | |||||||||   ||||| ||| | |||||| ||||||||||||||| ||||||| || ||||||||||   ||| || ||||||||||||     
5848533 ccattgaagacgttgtgaagttccatatggatttagcacaactctagtaataattaaactgtttaaagtttcatattgaaaagtgacttctttgtcagtt 5848434  T
135 aacattactgagaaattca--agactctgcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctcta 216  Q
    ||||  | |||| ||||||  | | | |   |||||||||||| | | |||||||||||| |||||||||| |||||| |||||    
5848433 aacacaaatgagtaattcaatatattataatttctttgccaagtagctccagtgaaaagatatccattccacgaccctcctcta 5848350  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 20344215 - 20344308
Alignment:
194 atccattccatgaccctgctctatacagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactc 287  Q
    ||||||||||||||||| ||||||||| |||| |||  ||||||||| |||   |||| ||||||||||| ||||| ||| |||| ||| ||||    
20344215 atccattccatgaccctcctctatacataattgttgttccctttgcaataacttgttgaggaaaaccatgagtatcgatcctatacgaaaactc 20344308  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 5802150 - 5802013
Alignment:
21 tgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatattcgtaagaga 120  Q
    ||||| ||||||| |||| | |||||||||||   ||| | ||| ||||| | || ||| | |||||||||  |||||| |||||  ||||| |||||||    
5802150 tgtgtgctatctgaccatagaaaacgttgtgaatttccgtatggatctagtatcattcttgcaataattgacttgttcacggtttggtattcataagaga 5802051  T
121 tttctttgtcagtgaacattactgagaaattcaagact 158  Q
     |||||||||| |||| | ||||| |||||||| ||||    
5802050 attctttgtcattgaagactactgtgaaattcatgact 5802013  T

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Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 20 - 292
Target Start/End: Complemental strand, 25808943 - 25808669
Alignment:
20 ctgtgtcctatctgtccattgtaaacgttgtgataatccatttgggtctagcaccactctagtaataattgaactgttcaaggtttcatattcgtaagag 119  Q
    ||||||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||    
25808943 ctgtgtcttatctgtccattgtaagcgttgtgatattccatttgggtctagcacgactctagtaataattgaactgctcaaagtttcatattggtaagag 25808844  T
120 atttctttgtcagtgaacattactgagaaattcaagactct--gcattctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctctat 217  Q
    ||||||||||||||||| ||||| |||||||||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
25808843 atttctttgtcagtgaatattacagagaaattcatgactctatgcactctttgccaagaaacaccagtgaaaagaaatccattccatgaccctgctctat 25808744  T
218 acagaattattgccccctttgcagtaagcagttggggaaaaccatgtgtatctatcttatatgaacactctcctt 292  Q
    |||||| ||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |||||||| ||||    
25808743 acagaaatattgccccgtttgcagtaaccagttgaggaaaaccatgtgtatctatcttatacgaacactcacctt 25808669  T

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