View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_high_40 (Length: 207)

Name: NF10441_high_40
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_high_40
NF10441_high_40
[»] chr6 (6 HSPs)
chr6 (1-201)||(12844192-12844393)
chr6 (7-128)||(19294623-19294744)
chr6 (4-91)||(34013772-34013859)
chr6 (4-91)||(34010991-34011078)
chr6 (4-85)||(14494228-14494310)
chr6 (40-91)||(17540340-17540392)
[»] chr2 (8 HSPs)
chr2 (4-128)||(26576354-26576478)
chr2 (4-85)||(34409372-34409453)
chr2 (4-60)||(32200656-32200712)
chr2 (18-128)||(13039183-13039293)
chr2 (18-111)||(9929957-9930050)
chr2 (5-85)||(17651543-17651622)
chr2 (62-128)||(4747817-4747883)
chr2 (79-128)||(32200610-32200659)
[»] chr7 (4 HSPs)
chr7 (4-130)||(44572275-44572401)
chr7 (4-91)||(22291100-22291187)
chr7 (4-49)||(45215847-45215892)
chr7 (73-128)||(45215790-45215845)
[»] chr4 (6 HSPs)
chr4 (4-130)||(3420086-3420212)
chr4 (4-117)||(54305910-54306024)
chr4 (4-82)||(45612230-45612308)
chr4 (4-91)||(55680971-55681059)
chr4 (4-90)||(40288939-40289025)
chr4 (4-124)||(29987960-29988080)
[»] chr8 (7 HSPs)
chr8 (5-128)||(2874848-2874972)
chr8 (4-60)||(15131780-15131837)
chr8 (6-84)||(18393355-18393434)
chr8 (4-60)||(37855301-37855356)
chr8 (73-128)||(28421390-28421445)
chr8 (79-128)||(15131734-15131783)
chr8 (75-127)||(14469735-14469787)
[»] chr3 (2 HSPs)
chr3 (4-83)||(30121035-30121114)
chr3 (51-128)||(25092126-25092203)
[»] chr1 (2 HSPs)
chr1 (4-83)||(32741137-32741214)
chr1 (76-128)||(48632323-48632375)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 12844192 - 12844393
Alignment:
Q  1 tcttaggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcc 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||    
T  12844192 tcttaggagtgtcgaagtaaagaaaaaaccaattatttaggacaccggttcgacacgtgtcgtacaggtgttataggagtgtcggacaccgcgacatgcc 12844291  T
Q  101 tagttctagaggtgtccatgcttcatagtttacgaaagctattttggttgaatattttatgggcagagttcag-ggtgtgcttatagctgttttcatctc 199  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  12844292 tagttctagaggtgtccgtgcttcatagtttacgaaagttattttggttgaatattttatgggcagagttcagaggtgtgcttatagctgttttcatgtc 12844391  T
Q  200 tc 201  Q
    ||    
T  12844392 tc 12844393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 19294623 - 19294744
Alignment:
Q  7 gagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctagttc 106  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||| | ||||||||||| |||||| ||| ||||| | |    
T  19294623 gagtgtcgaagtaaagaaaaaaacaattattttggacaccggttcgacacgtgtcgtacgggtgtcacaggagtgtcggacaccgcgacacgcctaatcc 19294722  T
Q  107 tagaggtgtccatgcttcatag 128  Q
    ||||||||||  ||||||||||    
T  19294723 tagaggtgtcggtgcttcatag 19294744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 34013772 - 34013859
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccg 91  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| |||| || |||||||||| |||||    
T  34013772 taggagtgtcgaagtaaagaaaaaaacaattatttaggacaccggttcgacacgtgtcgtacaagtgtcattggagtgtcggacaccg 34013859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 34011078 - 34010991
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccg 91  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | ||| |||| || |||||||||| |||||    
T  34011078 taggagtgtcgaagtaaagaaaaaaacaattatttaggacaccggttcgacacgtgtcgcacaagtgtcattggagtgtcggacaccg 34010991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 14494310 - 14494228
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaac-caattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcgg 85  Q
    ||||||||||||| |||||||||||  |||||||||| ||||| |||||||||||||| |||| ||||| |||||||||||||    
T  14494310 taggagtgtcgaagtaaagaaaaaaaacaattatttaagacactggttcgacacgtgtcgtacgggtgtcataggagtgtcgg 14494228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 17540340 - 17540392
Alignment:
Q  40 ggacaccggttcgacacgtgttgtac-aggtgttataggagtgtcggtcaccg 91  Q
    ||||||||||||||| ||||||||||  ||||| ||||||||||||| |||||    
T  17540340 ggacaccggttcgactcgtgttgtacgcggtgtcataggagtgtcggacaccg 17540392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 26576354 - 26576478
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctag 103  Q
    |||||||||| || ||||||||||| |||||||||| |||||||||||||||||||| |||| ||||| ||||||||||||| |||||| ||| | ||||    
T  26576354 taggagtgtcaaagtaaagaaaaaatcaattatttaagacaccggttcgacacgtgtcgtacgggtgtcataggagtgtcggacaccgcgacacgtctag 26576453  T
Q  104 ttctagaggtgtccatgcttcatag 128  Q
    | |||||||||||| ||||||||||    
T  26576454 tcctagaggtgtccgtgcttcatag 26576478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 34409453 - 34409372
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcgg 85  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||| ||| | |||||||||||||    
T  34409453 taggcgtgtcgaagtaaagaaaaaaacaattatttaggacaccggtttgacacgtgtcgtacgggtatcataggagtgtcgg 34409372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 32200712 - 32200656
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgt 60  Q
    ||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||    
T  32200712 taggagtgtcgaagtaaagaaaaaatcaattatttaggacaccagttcgacacgtgt 32200656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 13039183 - 13039293
Alignment:
Q  18 taaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctagttctagaggtgtcc 117  Q
    ||||||||||| |||||||||| |||||||| |||||| |||| |||| ||  | ||| |||||| || |||||| ||| ||||||| ||| ||||||||    
T  13039183 taaagaaaaaatcaattatttaagacaccggatcgacatgtgtcgtacggggttcatatgagtgttggacaccgcgacacgcctagtcctataggtgtcc 13039282  T
Q  118 atgcttcatag 128  Q
     ||||||||||    
T  13039283 gtgcttcatag 13039293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 9929957 - 9930050
Alignment:
Q  18 taaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctagttctagag 111  Q
    ||||||||||| |||| ||||||||||||| || ||||||| | ||||  |||| ||||||||||||| ||| || |||||||||||| |||||    
T  9929957 taaagaaaaaaacaatcatttaggacaccgttttgacacgtttcgtacgagtgtcataggagtgtcggacacagccacatgcctagttttagag 9930050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 17651543 - 17651622
Alignment:
Q  5 aggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcgg 85  Q
    |||||||||||| ||||||| ||| ||| ||||||||||||  |||||||| |||||||||| |||| ||| |||||||||    
T  17651543 aggagtgtcgaagtaaagaagaaaacaactatttaggacacttgttcgaca-gtgttgtacaagtgtcataagagtgtcgg 17651622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 4747883 - 4747817
Alignment:
Q  62 gtacaggtgttataggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 128  Q
    ||||| |||| |||||| |||||| |||| | ||| ||||||| |||||||||||| ||||||||||    
T  4747883 gtacaagtgtcataggattgtcggacaccacgacacgcctagtcctagaggtgtccgtgcttcatag 4747817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 32200659 - 32200610
Alignment:
Q  79 gtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 128  Q
    ||||||| |||||| ||| ||||||| |||||||||||| ||||||||||    
T  32200659 gtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatag 32200610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 2e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 44572401 - 44572275
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctag 103  Q
    ||||||||||||| |||||||||||  || ||||||||||||||||||||||||||| ||||  |||| ||||||||||||| |||||| ||| ||||||    
T  44572401 taggagtgtcgaagtaaagaaaaaaataagtatttaggacaccggttcgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctag 44572302  T
Q  104 ttctagaggtgtccatgcttcatagtt 130  Q
    |  ||||||||||| ||||||||||||    
T  44572301 tcgtagaggtgtccgtgcttcatagtt 44572275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 22291100 - 22291187
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccg 91  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| |||| ||||| ||||||||||||| |||||    
T  22291100 taggagtgtcgaagtaaagaaaaaaacaattatttaggacaccggttcaacacgtgtggtacgggtgtcataggagtgtcggacaccg 22291187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 45215892 - 45215847
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggt 49  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||||    
T  45215892 taggagtgacgaagtaaagaaaaaaacaattatttaggacaccggt 45215847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 45215845 - 45215790
Alignment:
Q  73 ataggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 128  Q
    ||||||||||||| |||||| ||| ||||||| || ||||||||| ||||||||||    
T  45215845 ataggagtgtcggacaccgcgacacgcctagtcctggaggtgtccgtgcttcatag 45215790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 3420086 - 3420212
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctag 103  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| ||||   ||| ||| ||||||| | |||||||||| ||||||    
T  3420086 taggagtgtcgaagtaaagaaaaaaacaattatttaggacaccgattcgacacgtgtcgtacgattgtcataagagtgtcagacaccgcaacacgcctag 3420185  T
Q  104 ttctagaggtgtccatgcttcatagtt 130  Q
    |  ||||||||||| ||||||||||||    
T  3420186 tcttagaggtgtccgtgcttcatagtt 3420212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 54305910 - 54306024
Alignment:
Q  4 taggagtgtcgaaataaaga-aaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgccta 102  Q
    ||||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||| |||||  ||| |||||    
T  54305910 taggagtgtcgaagtaaagacaaaaaacaattatttaggacatcggttcgacacgtgtcgtacgggtgtcataggagtgtcggacaccgtgacacgccta 54306009  T
Q  103 gttctagaggtgtcc 117  Q
    || ||||||||||||    
T  54306010 gtcctagaggtgtcc 54306024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 45612308 - 45612230
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgt 82  Q
    ||||||||||||  ||||||||||| ||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||    
T  45612308 taggagtgtcgacgtaaagaaaaaaacaattatttaggacaccggtttgacacgtgtcgtacgggtgtcataggagtgt 45612230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 55680971 - 55681059
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaac-caattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccg 91  Q
    ||||||||||||| |||||||||||  ||||||||||||||| |||||||||| |||| ||||| |||| ||||||||||||| |||||    
T  55680971 taggagtgtcgaagtaaagaaaaaaaacaattatttaggacagcggttcgacatgtgtcgtacaagtgtcataggagtgtcggacaccg 55681059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 40289025 - 40288939
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcacc 90  Q
    ||||||||||||| ||||||||||  ||||||||||| ||||||||||||||||| | ||||  ||||||||||| |||||| ||||    
T  40289025 taggagtgtcgaagtaaagaaaaacacaattatttagaacaccggttcgacacgtatcgtacgagtgttataggaatgtcggacacc 40288939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 29987960 - 29988080
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctag 103  Q
    ||||||||||||| ||||||||||| |||||||||| || |||| ||| |||| | |||||| | ||| ||||||| |||   |||| | ||| ||||||    
T  29987960 taggagtgtcgaagtaaagaaaaaaacaattatttacgataccgattcaacacatattgtacggatgtcataggagcgtcaaacaccacgacacgcctag 29988059  T
Q  104 ttctagaggtgtccatgcttc 124  Q
    |||||||||||||| ||||||    
T  29988060 ttctagaggtgtccgtgcttc 29988080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 2874972 - 2874848
Alignment:
Q  5 aggagtgtcgaaataaagaa-aaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctag 103  Q
    ||||||||| |||||||||| ||||||| |||||||| ||||  ||  |||||||||||||   |||| ||||| |||||||  ||||| |||||| ||     
T  2874972 aggagtgtcaaaataaagaagaaaaccatttatttagtacacttgtctgacacgtgttgtatgagtgtcataggcgtgtcggagaccgcgacatgcgtaa 2874873  T
Q  104 ttctagaggtgtccatgcttcatag 128  Q
    | |||||||||||| ||||||||||    
T  2874872 tcctagaggtgtccgtgcttcatag 2874848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 15131837 - 15131780
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaac-caattatttaggacaccggttcgacacgtgt 60  Q
    ||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||||    
T  15131837 taggagtgtcgaagtaaagaaaaaaaacaattattcaggacaccggttcgacacgtgt 15131780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 18393434 - 18393355
Alignment:
Q  6 ggagtgtcgaaataaagaa-aaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtcg 84  Q
    ||||||||||| ||||||  ||||| |||||||||||||||  ||||||||||||| ||||  |||| ||||||||||||    
T  18393434 ggagtgtcgaagtaaagatgaaaacaaattatttaggacactagttcgacacgtgtcgtacgagtgtcataggagtgtcg 18393355  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 37855301 - 37855356
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgt 60  Q
    ||||||||| ||| |||||||||||| |||||||||||||| ||||| |||||||||    
T  37855301 taggagtgttgaagtaaagaaaaaac-aattatttaggacaacggtttgacacgtgt 37855356  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 28421390 - 28421445
Alignment:
Q  73 ataggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 128  Q
    |||| ||| |||| |||||||||||| |||||| ||||||||||||| ||||||||    
T  28421390 atagcagtatcggacaccgcaacatgtctagttttagaggtgtccatacttcatag 28421445  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 15131783 - 15131734
Alignment:
Q  79 gtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 128  Q
    ||||||| |||||| ||| ||||||| |||||||||||| ||||||||||    
T  15131783 gtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatag 15131734  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 14469787 - 14469735
Alignment:
Q  75 aggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcata 127  Q
    ||||||||||| |||| | |||  |||||| ||||||||||||||||||||||    
T  14469787 aggagtgtcggacaccacgacacacctagtgctagaggtgtccatgcttcata 14469735  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 30121035 - 30121114
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtc 83  Q
    ||||||||| ||| ||||| ||||| ||||||||||||||| || | |||||||||| |||| ||| | |||||||||||    
T  30121035 taggagtgtggaagtaaagcaaaaaacaattatttaggacatcgatccgacacgtgtcgtacgggtatcataggagtgtc 30121114  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 25092203 - 25092126
Alignment:
Q  51 cgacacgtgttgtacaggtgttataggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 128  Q
    |||||||||||||||  |||| |||| |||||| | ||| || |||  |||||| |||||||||||| ||||||||||    
T  25092203 cgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacacacctagtcctagaggtgtccgtgcttcatag 25092126  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 32741137 - 32741214
Alignment:
Q  4 taggagtgtcgaaataaagaaaaaaccaattatttaggacaccggttcgacacgtgttgtacaggtgttataggagtgtc 83  Q
    ||||||||||||| |||| || ||  |||||||||||||| | |||||||||||||| ||||  |||| |||||||||||    
T  32741137 taggagtgtcgaagtaaaaaataa--caattatttaggacgctggttcgacacgtgtcgtacgagtgtcataggagtgtc 32741214  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 48632375 - 48632323
Alignment:
Q  76 ggagtgtcggtcaccgcaacatgcctagttctagaggtgtccatgcttcatag 128  Q
    |||||||||| |||||| ||| ||||||| |||||||||||| ||||||||||    
T  48632375 ggagtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatag 48632323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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