View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_high_6 (Length: 425)

Name: NF10441_high_6
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_high_6
NF10441_high_6
[»] chr7 (3 HSPs)
chr7 (201-385)||(39321429-39321613)
chr7 (60-117)||(46152238-46152295)
chr7 (85-137)||(35116922-35116974)
[»] scaffold0047 (1 HSPs)
scaffold0047 (319-359)||(13296-13336)
[»] chr1 (1 HSPs)
chr1 (81-137)||(32161579-32161635)
[»] chr6 (1 HSPs)
chr6 (60-139)||(342984-343066)
[»] chr8 (3 HSPs)
chr8 (18-92)||(38813716-38813790)
chr8 (60-146)||(13244707-13244795)
chr8 (22-112)||(36178448-36178540)
[»] chr3 (2 HSPs)
chr3 (60-135)||(15985279-15985356)
chr3 (60-129)||(31752692-31752763)
[»] chr4 (1 HSPs)
chr4 (60-137)||(4197196-4197275)
[»] chr2 (1 HSPs)
chr2 (60-137)||(12880121-12880200)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 201 - 385
Target Start/End: Complemental strand, 39321613 - 39321429
Alignment:
Q  201 gagacggaaaaaatataccattacattttcctataaatttatatgcaacccaaattatttaacatattttgtattgttctacacatgattaatatgttgc 300  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39321613 gagacggaaaaagtataccattacattttcctataaatttatatgcaacccaaattatttaacatattttgtattgttctacacatgattaatatgctgc 39321514  T
Q  301 aagccacatatcctcaatgttggtgacatttgtgatattggtcaactacaatgttacaagtcgttatcttctctctttttataag 385  Q
     ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39321513 gagccacatatccttaatgttggtgacatttatgatattggtcaactacaatgttacaagtcgttttcttctctctttttataag 39321429  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 46152295 - 46152238
Alignment:
Q  60 attcaacacattgaaatataaaaataaatttttctgcataaaatttatcaattctttc 117  Q
    ||||||||||||||||| | ||||| ||||||||| |||||| |||||||||| ||||    
T  46152295 attcaacacattgaaatttgaaaatgaatttttctacataaagtttatcaattatttc 46152238  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 35116922 - 35116974
Alignment:
Q  85 aaatttttctgcataaaatttatcaattctttcgtgttttgaatcattaacaa 137  Q
    |||||||||| |||||||||||| |||| |||| | ||||||||| |||||||    
T  35116922 aaatttttctacataaaatttataaattatttccttttttgaatccttaacaa 35116974  T

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Target: scaffold0047 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 13296 - 13336
Alignment:
Q  319 gttggtgacatttgtgatattggtcaactacaatgttacaa 359  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  13296 gttggtgacatttgtgatattggtcaaccacaatattacaa 13336  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 32161579 - 32161635
Alignment:
Q  81 aaataaatttttctgcataaaatttatcaattctttcgtgttttgaatcattaacaa 137  Q
    |||||| ||||||| ||||||||||||||||| ||||   |||||||||||||||||    
T  32161579 aaataactttttctacataaaatttatcaattatttctatttttgaatcattaacaa 32161635  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 342984 - 343066
Alignment:
Q  60 attcaacacattgaaatat--aaaaataaatttttctgcataaaatttatcaattctttc-gtgttttgaatcattaacaaat 139  Q
    |||||||||||||||| ||  |||||||| ||||| ||||||||| ||||||||| ||||  | ||||||||| |||||||||    
T  342984 attcaacacattgaaacattaaaaaataactttttatgcataaaagttatcaattgtttctattttttgaatctttaacaaat 343066  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 38813716 - 38813790
Alignment:
Q  18 gttaagaagttcaaaatgaaaattgaatcttgagaatcgtgaattcaacacattgaaatataaaaataaattttt 92  Q
    |||||||||||||||||||||| |  |||||| |||| ||| |||||||| ||||||| || ||||  |||||||    
T  38813716 gttaagaagttcaaaatgaaaaatttatcttgggaattgtgtattcaacatattgaaacattaaaaagaattttt 38813790  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 13244707 - 13244795
Alignment:
Q  60 attcaacacattgaaatat--aaaaataaatttttctgcataaaatttatcaattctttcgtgttttgaatcattaacaaatatcttta 146  Q
    |||||| | ||||||||||  ||||| || ||| ||| ||||||| ||||||||| ||||   ||||||||||||||||| ||||||||    
T  13244707 attcaatatattgaaatatcaaaaaacaattttgtctacataaaagttatcaattgtttctatttttgaatcattaacaagtatcttta 13244795  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 36178448 - 36178540
Alignment:
Q  22 agaagttcaaaatgaaaattgaatcttgagaatcgtgaattcaacacattgaaatat--aaaaataaatttttctgcataaaatttatcaatt 112  Q
    ||||||| ||| ||||||||  ||||| | ||| ||| |||||| ||||||||| |   |||||||  |||||||||||||||||||||||||    
T  36178448 agaagtttaaagtgaaaattttatcttaaaaattgtgcattcaagacattgaaacaacaaaaaatatttttttctgcataaaatttatcaatt 36178540  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 15985279 - 15985356
Alignment:
Q  60 attcaacacattgaaatataaaaa--taaatttttctgcataaaatttatcaattctttcgtgttttgaatcattaac 135  Q
    ||||||||||||||||||| ||||  ||| |||||   ||||||||||||||||| |||| | ||||||||| |||||    
T  15985279 attcaacacattgaaatattaaaaagtaatttttttaacataaaatttatcaattatttccttttttgaatctttaac 15985356  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 31752763 - 31752692
Alignment:
Q  60 attcaacacattgaaatataaaaa--taaatttttctgcataaaatttatcaattctttcgtgttttgaatc 129  Q
    |||||||||||| |||||| ||||  || |||||||  ||||||||||||||||| |||| | |||||||||    
T  31752763 attcaacacattaaaatattaaaaagtacatttttcaacataaaatttatcaattatttccttttttgaatc 31752692  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 4197275 - 4197196
Alignment:
Q  60 attcaacacattgaaa--tataaaaataaatttttctgcataaaatttatcaattctttcgtgttttgaatcattaacaa 137  Q
    ||||||||| ||||||  || |||||||| ||||||| |||||||||||| |||  |||| | ||||||||| |||||||    
T  4197275 attcaacaccttgaaacttaaaaaaataactttttctacataaaatttataaatcatttcctcttttgaatccttaacaa 4197196  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 12880121 - 12880200
Alignment:
Q  60 attcaacacattgaaatat--aaaaataaatttttctgcataaaatttatcaattctttcgtgttttgaatcattaacaa 137  Q
    ||||||||||||||||| |  |||| ||| ||||||| ||||||| ||||||||| ||||   ||||||||| |||||||    
T  12880121 attcaacacattgaaattttaaaaagtaattttttctacataaaacttatcaattatttccatttttgaatccttaacaa 12880200  T

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