View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_low_1 (Length: 666)

Name: NF10441_low_1
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_low_1
NF10441_low_1
[»] chr7 (1 HSPs)
chr7 (7-650)||(40383108-40383751)


Alignment Details
Target: chr7 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 7 - 650
Target Start/End: Original strand, 40383108 - 40383751
Alignment:
Q  7 ggacgtaggaagaacgacggtaagcgttgtaagcagtttctctcatgaaaatgtaacgctcttgaaggaaaacggggatagcttcagcacaagtgtagaa 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383108 ggacataggaagaacgacggtaagcgttgtaagcagtttctctcatgaaaatgtaacgctcttgaaggaaaacggggatagcttcagcacaagtgtagaa 40383207  T
Q  107 ggttgttgacatggcaaaggcgaagaaacccaaacgctcttgaacaccttttggtgaatcgtcaagacggtaaaagatggtggccaagattcctccggta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383208 ggttgttgacatggcaaaggcgaagaaacccaaacgctcttgaacaccttttggtgaatcgtcaagacggtaaaagatggtggccaagattcctccggta 40383307  T
Q  207 accagaactgcaccgagacggattccgaataattccggcatccgtcttgagtttagtagagaccgttttccaataactgccatttcaatccaaaacggat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40383308 accagaactgcaccgagacggattccgaataattccggcatccgtcttgagtttagtagagaccgttttccaataaccgccatttcaatccaaaacggat 40383407  T
Q  307 ttgcaaaagtggcaactgaggacgcaattgagttaccgtttccattaccaccattagttcctgagactaatttccctcttgagatactggcactgatggc 406  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  40383408 ttgcaaaagtggcaactgaggacgcaattgagttaccgttgccattaccaccgttagttcctgagactaatttccctcttgagatactcgcactgatggc 40383507  T
Q  407 gtcttttaacgacattttaggtccgttaacggcagttacagatgctggtttatactttaactgccatgacttgttgaactctacaaggctttttgttcct 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383508 gtcttttaacgacattttaggtccgttaacggcagttacagatgctggtttatactttaactgccatgacttgttgaactctacaaggctttttgttcct 40383607  T
Q  507 ccgggagtctcttcaagctcacggattagatccagtgcgaattctgtcttgttctcgttttctggtatgggatggccgaattcatggaaaaaactaggga 606  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383608 ccgggattttcttcaagctcacggattagatccagtgcgaattctgtcttgttctcgttttctggtatgggatggccgaattcatggaaaaaactaggga 40383707  T
Q  607 ggttcgccggagagccgctgtagacggtttgtccatgggaaagg 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  40383708 ggttcgccggagagccgctgtagacggtttgtccatgggaaagg 40383751  T

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