View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_11 (Length: 423)
Name: NF10441_low_11
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 26825879 - 26825493
Alignment:
| Q |
19 |
gtagttccatatgaagtcatctgcacagtcacaaattgccctaaatgttaattgattttgtaatattttatagtcatcattcatatagactatttaaata |
118 |
Q |
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| T |
26825879 |
gtagttccatatgaagtcatctgcacagtcacaaattgccctaaatgttaattgattttgcaatattttatagtcatcattcatatagactatttaaata |
26825780 |
T |
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| Q |
119 |
agaaacaaatataataactaaatttcttacctgcaaagagtaatacatggttgaaaatgaatgca---aatagtattgaaattaaaacaacaaattgaca |
215 |
Q |
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| T |
26825779 |
agaaacaaatataataactaaatttcttacctg----------tacatggttgaaaatgaatgcaattaatagtattgaaattaaaacaacaaattgaca |
26825690 |
T |
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| Q |
216 |
attgaaaatgtactcataatatctatggttttctgcgcatagcaatagtaaaatacaataccttggagactaatttagttactataa-nnnnnnnnngac |
314 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
26825689 |
attgaaaatgtactcataatatctatagttttctgcgcatagcaatagtaaaatacaataccttggagactaatttatttactataattatttttttgac |
26825590 |
T |
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| Q |
315 |
aaaaatttagttactataattgaacttacaaaatctcagttagttaatagtatgatggaattgaatttatagaaaagcattatcctctatatattcatct |
414 |
Q |
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| T |
26825589 |
aaaaatttagttactataattgaacttacaaaatctcagttagttaa---tatgatggaattgaatttatagaaaagcattatcctctatatattcatct |
26825493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 18851987 - 18852049
Alignment:
| Q |
67 |
taattgattttgtaatattttatagtcatcattcatatagactatttaaataagaaacaaata |
129 |
Q |
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| T |
18851987 |
taattgattttgctatgttttataggcatcattcatacaaattatgtaaataagaaacaaata |
18852049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 18852062 - 18852126
Alignment:
| Q |
67 |
taattgattttgtaatattttatagtcatcattcat--atagactatttaaataagaaacaaata |
129 |
Q |
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|||||||||||| ||| ||||||||||| ||||||| | | ||||| ||||||||||||||||| |
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| T |
18852062 |
taattgattttgcaatgttttatagtcaccattcatacacaaactatgtaaataagaaacaaata |
18852126 |
T |
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