View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_low_12 (Length: 418)

Name: NF10441_low_12
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_low_12
NF10441_low_12
[»] chr7 (13 HSPs)
chr7 (1-259)||(8576763-8577022)
chr7 (254-404)||(8577048-8577197)
chr7 (1-164)||(8546069-8546232)
chr7 (1-246)||(8582137-8582384)
chr7 (1-259)||(8570748-8571009)
chr7 (56-168)||(8559825-8559937)
chr7 (119-161)||(8602529-8602571)
chr7 (80-158)||(7877307-7877385)
chr7 (56-150)||(8538528-8538622)
chr7 (107-160)||(8382448-8382501)
chr7 (120-168)||(8567243-8567291)
chr7 (119-167)||(8610472-8610520)
chr7 (80-158)||(29581415-29581493)
[»] chr8 (1 HSPs)
chr8 (1-163)||(12528941-12529103)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 8576763 - 8577022
Alignment:
Q  1 tatttcttcagcaacaaagcgtttttcctcacctttgtagttcacaacaattgtcggtttatcattagcaccggcaatgaccttaaagggccacaaaaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  8576763 tatttcttcagcaacaaagcgtttttcctcacctttgtagttcacaacgattgtcggtttgtcattagtaccggcaatgaccttaaagggccacaaaaga 8576862  T
Q  101 caatccttctgaacaatggaatcactatatttccttccaattaacctctttgtatctgtaaaaattaacattggtgatgcattttttgctgttcagatat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  8576863 caatccttctgaacaatggaatcactatatttccttccaattaacctctttgtatctgtaaaaattaaca-tggtgatgtattttttgctgttcagatat 8576961  T
Q  201 tcataaaata--acaattataattttaactaaaagagttaaatatgttcttcgtctctata 259  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8576962 tcataaaataacacaattataattttaactaaaagagttaaatatgttcttcgtctctata 8577022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 254 - 404
Target Start/End: Original strand, 8577048 - 8577197
Alignment:
Q  254 tctatactctcttttcagttccaacaaatttccaaagcatgtatttatgtacaaatactaaaaagtgagtactctatacaaatatattttgttggttaca 353  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  8577048 tctatactcacttttcagttccaacaaatttccaaagcatgtatttatgtacaaatactaaaa-gtgagtactctatacaaatatgttttgttggttaca 8577146  T
Q  354 gtaaaaatttcgtaaaccctaactaaaagtatgaaaattataagtaatata 404  Q
    ||||||| ||| |||||||||||||||||||||||||||||| ||||||||    
T  8577147 gtaaaaaattcttaaaccctaactaaaagtatgaaaattataggtaatata 8577197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 8546069 - 8546232
Alignment:
Q  1 tatttcttcagcaacaaagcgtttttcctcacctttgtagttcacaacaattgtcggtttatcattagcaccggcaatgaccttaaagggccacaaaaga 100  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||| |||||| |||||| ||||||||||||||||||||| ||     
T  8546069 tatttcttcagcaacaaagtgcttttcctcacccttgtagttcacaagaattgtcggtttgtcattaacaccggaaatgaccttaaagggccacaacagt 8546168  T
Q  101 caatccttctgaacaatggaatcactatatttccttccaattaacctctttgtatctgtaaaaa 164  Q
      ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  8546169 agatcattctgaacaaaggaatcactatatttccttccaattaacctctttgcatctgcaaaaa 8546232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 8582137 - 8582384
Alignment:
Q  1 tatttcttcagcaacaaagcgtttttcctcacctttgtagttcacaacaattgtcggtttatcattagcaccggcaatgaccttaaagggccacaaaaga 100  Q
    |||||||||||||| |||| ||||||||| ||| |||||||||||||| ||||||||||| ||||||||||| ||  ||||||| |||||||||||        
T  8582137 tatttcttcagcaagaaagtgtttttccttacccttgtagttcacaacgattgtcggtttgtcattagcacctgcggtgaccttgaagggccacaacttg 8582236  T
Q  101 caatccttctgaacaatggaatcactatatttccttccaattaacctctttgtatctgtaaaaattaacattggtgatgcattttttgctgttcagatat 200  Q
      |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||  ||  |||| |||||||||||    
T  8582237 atatccttttgaacaatggaatcactatatttccttccaattaacctctttgcatctgaaaaaattaa-aatggtgatatatcatttgttgttcagatat 8582335  T
Q  201 tca---taaaataacaattataattttaactaaaagagttaaatatgtt 246  Q
      |    |||||||||||||||||  ||| ||||||||  |||||||||    
T  8582336 caaaataaaaataacaattataataataagtaaaagagcgaaatatgtt 8582384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 8570748 - 8571009
Alignment:
Q  1 tatttcttcagcaacaaagcgtttttcctcacctttgtagttcacaacaattgtcggtttatcattagcaccggcaatgaccttaaagggccacaaaaga 100  Q
    |||||||||||| ||||| |||||||||| |||  |||| |||||||  ||||| ||||| |  ||||||||||  |||||||||||||||||||||||     
T  8570748 tatttcttcagctacaaaacgtttttccttacccatgtacttcacaatgattgttggtttgttgttagcaccggagatgaccttaaagggccacaaaagt 8570847  T
Q  101 caatccttctgaacaatggaatcactatatttccttccaattaacctctttgtatctgtaaaaattaacattggtgatgcattttttgctgttcagatat 200  Q
    | |||| ||||||| |||||||||||||| |||||||||||||||||||||  ||||| ||||||||| | | |||||| ||  |||  ||||||||| |    
T  8570848 cgatccatctgaacgatggaatcactatacttccttccaattaacctctttacatctgcaaaaattaa-aatagtgatgaatcatttcttgttcagatgt 8570946  T
Q  201 tca----taaaataacaattataattttaactaaaagagttaaatatgttcttcgtctctata 259  Q
    |||     |||||||||| ||||||   || |||||||| |||||||||| || |||||||||    
T  8570947 tcaaaataaaaataacaactataataagaagtaaaagagctaaatatgtttttggtctctata 8571009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 8559825 - 8559937
Alignment:
Q  56 ggtttatcattagcaccggcaatgaccttaaagggccacaaaagacaatccttctgaacaatggaatcactatatttccttccaattaacctctttgtat 155  Q
    ||||| |||||| | || || |||||||||||||||||||| ||   |||  | || || ||||||||||| ||||||||||||||||||||||||| ||    
T  8559825 ggtttgtcattatcgccagcgatgaccttaaagggccacaacagtacatcactttggactatggaatcactgtatttccttccaattaacctctttgcat 8559924  T
Q  156 ctgtaaaaattaa 168  Q
    ||| |||||||||    
T  8559925 ctgcaaaaattaa 8559937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 8602529 - 8602571
Alignment:
Q  119 gaatcactatatttccttccaattaacctctttgtatctgtaa 161  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  8602529 gaatcactatatttccttccaattaacctctttgcatctgtaa 8602571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 7877385 - 7877307
Alignment:
Q  80 accttaaagggccacaaaagacaatccttctgaacaatggaatcactatatttccttccaattaacctctttgtatctg 158  Q
    |||||||| |||||||| |||  ||| ||||||| ||  ||||| ||||||||||||||||| |||||||||| |||||    
T  7877385 accttaaatggccacaacagaatatcattctgaataacagaatcgctatatttccttccaatcaacctctttgcatctg 7877307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 8538528 - 8538622
Alignment:
Q  56 ggtttatcattagcaccggcaatgaccttaaagggccacaaaagacaatccttctgaacaatggaatcactatatttccttccaattaacctctt 150  Q
    ||||||||||||||| | ||| | ||||| ||||||||||| ||  |||| ||||||| ||  |||||||||||||| |||||||  ||||||||    
T  8538528 ggtttatcattagcatcagcatttaccttgaagggccacaacagtaaatcattctgaataacagaatcactatattttcttccaaccaacctctt 8538622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 8382501 - 8382448
Alignment:
Q  107 ttctgaacaatggaatcactatatttccttccaattaacctctttgtatctgta 160  Q
    ||||||| ||| ||||||||||||||||||||||| || ||||||| |||||||    
T  8382501 ttctgaataatagaatcactatatttccttccaatcaatctctttgcatctgta 8382448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 8567243 - 8567291
Alignment:
Q  120 aatcactatatttccttccaattaacctctttgtatctgtaaaaattaa 168  Q
    ||||||||||||| |||||| |||||||||||| ||||| |||||||||    
T  8567243 aatcactatattttcttccagttaacctctttgcatctgcaaaaattaa 8567291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 8610472 - 8610520
Alignment:
Q  119 gaatcactatatttccttccaattaacctctttgtatctgtaaaaatta 167  Q
    ||||| ||||||||||||||||| |||||||||| ||||| ||||||||    
T  8610472 gaatcgctatatttccttccaatcaacctctttgcatctgaaaaaatta 8610520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 29581493 - 29581415
Alignment:
Q  80 accttaaagggccacaaaagacaatccttctgaacaatggaatcactatatttccttccaattaacctctttgtatctg 158  Q
    ||||||||||||||||||     ||| | ||||| ||| |||||||||||||| ||||| ||||||||||||| |||||    
T  29581493 accttaaagggccacaaatttatatcatcctgaataatagaatcactatattttcttccgattaacctctttgcatctg 29581415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 12528941 - 12529103
Alignment:
Q  1 tatttcttcagcaacaaagcgtttttcctcacctttgtagttcacaacaattgtcggtttatcattagcaccggcaatgaccttaaagggccacaaaaga 100  Q
    ||||||||||||||||||| | | |||||  || |||||||||||||  ||  ||||||| ||||||||||| ||| |||||||||| |||||||| ||     
T  12528941 tatttcttcagcaacaaagtgatgttccttcccattgtagttcacaaggatcttcggtttgtcattagcaccagcagtgaccttaaatggccacaacagt 12529040  T
Q  101 caatccttctgaacaatggaatcactatatttccttccaattaacctctttgtatctgtaaaa 163  Q
      |||||||||||| ||||| |||||||| || ||||||||||||||||||| ||||| ||||    
T  12529041 tgatccttctgaactatggagtcactatactttcttccaattaacctctttgcatctgcaaaa 12529103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University