View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10441_low_13 (Length: 406)

Name: NF10441_low_13
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10441_low_13
NF10441_low_13
[»] chr5 (7 HSPs)
chr5 (1-390)||(12000310-12000699)
chr5 (84-136)||(558308-558360)
chr5 (84-136)||(36940694-36940746)
chr5 (84-136)||(41998254-41998306)
chr5 (84-119)||(26668833-26668868)
chr5 (84-119)||(26940430-26940465)
chr5 (84-119)||(39519941-39519976)
[»] chr4 (4 HSPs)
chr4 (84-134)||(8028835-8028885)
chr4 (84-136)||(19907808-19907860)
chr4 (84-134)||(19103516-19103566)
chr4 (84-136)||(37263068-37263120)
[»] chr2 (5 HSPs)
chr2 (84-133)||(44629988-44630037)
chr2 (86-134)||(24536524-24536573)
chr2 (84-136)||(17973855-17973907)
chr2 (84-136)||(30652453-30652505)
chr2 (84-116)||(9183922-9183954)
[»] chr3 (5 HSPs)
chr3 (84-136)||(12970314-12970366)
chr3 (84-137)||(8884781-8884834)
chr3 (84-136)||(3674178-3674230)
chr3 (84-136)||(23664626-23664678)
chr3 (84-136)||(18468751-18468803)
[»] chr7 (1 HSPs)
chr7 (84-136)||(12802819-12802872)
[»] chr8 (1 HSPs)
chr8 (84-136)||(4241510-4241562)
[»] chr6 (3 HSPs)
chr6 (84-136)||(16834666-16834718)
chr6 (84-118)||(12797275-12797309)
chr6 (88-136)||(22693955-22694003)
[»] chr1 (2 HSPs)
chr1 (84-136)||(10136864-10136916)
chr1 (84-136)||(25845295-25845347)


Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 12000310 - 12000699
Alignment:
Q  1 agacccattttgaattcaaatttaatcttcaacttcataccaatttcgtggaagcaagcattatcacttttttaggatgttatagtgatagaacatgcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12000310 agacccattttgaattcaaatttaatcttcaacttcataccaatttcgtggaagcaagcattatcacttttttaggatgttatagtgatagaacatgcta 12000409  T
Q  101 tgagaaaattaagaaagcacgaaccctgcagcgacaatttaatgagaatttgcaccttgaaataattttcagttgttcttcaaaagtcactaaaacgtca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12000410 tgagaaaattaagaaagcacgaaccctgcagcgacaatttaatgagaatttgcaccttgaaataattttcagttgttcttcaaaagtcactaaaacgtca 12000509  T
Q  201 taatttgctaagcaaaatcgtaacttttcttagagaagttttcgttgttttatgtcaaatattaattaattgcttcactaagccagcatgcaactcgctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12000510 taatttgctaagcaaaatcgtaacttttcttagagaagttttcgttgttttatgtcaaatattaattaattgcttcactaagccagcatgcaactcgctt 12000609  T
Q  301 actgagcttacttagctctgatttcttcatttctttgatgatcttgataactcatcctcttgagttattacactgcttatcctataaact 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12000610 actgagcttacttagctctgatttcttcatttctttgatgatcttgataactcatcctcttgagttattacactgcttatcctataaact 12000699  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 558360 - 558308
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    ||||||||||||||||||||||||| |||||||||| ||  ||||||| ||||    
T  558360 agtgatagaacatgctatgagaaaagtaagaaagcatgattcctgcagtgaca 558308  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 36940694 - 36940746
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    ||||||||||||||||||||||||| |||||||||| ||  ||||||| ||||    
T  36940694 agtgatagaacatgctatgagaaaagtaagaaagcatgattcctgcagtgaca 36940746  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 41998306 - 41998254
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    ||||||||||||||||||||||||| |||||||||| ||  ||||||| ||||    
T  41998306 agtgatagaacatgctatgagaaaagtaagaaagcatgattcctgcagtgaca 41998254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 119
Target Start/End: Complemental strand, 26668868 - 26668833
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagca 119  Q
    ||||||||||||||||||||||||| ||||||||||    
T  26668868 agtgatagaacatgctatgagaaaagtaagaaagca 26668833  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 119
Target Start/End: Complemental strand, 26940465 - 26940430
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagca 119  Q
    ||||||||||||||||||||||||| ||||||||||    
T  26940465 agtgatagaacatgctatgagaaaagtaagaaagca 26940430  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 119
Target Start/End: Complemental strand, 39519976 - 39519941
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagca 119  Q
    ||||||||||||||||||||||||| ||||||||||    
T  39519976 agtgatagaacatgctatgagaaaaataagaaagca 39519941  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 8028835 - 8028885
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcga 134  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||||||    
T  8028835 agtgattgaacatgctatgagaaaattaagaaagcatgaatcctgcagcga 8028885  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 19907860 - 19907808
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    ||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||    
T  19907860 agtgagagaacatgctatgagaaaattaataaagcatgaatcctgcagcgaca 19907808  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 19103566 - 19103516
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcga 134  Q
    ||||||||||||||||||||||||| |||||||||| ||| | ||||||||    
T  19103566 agtgatagaacatgctatgagaaaagtaagaaagcatgaatcatgcagcga 19103516  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 37263068 - 37263120
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    ||||||||||||||||||||||||| |||||||||| ||  ||||||| ||||    
T  37263068 agtgatagaacatgctatgagaaaagtaagaaagcatgattcctgcagtgaca 37263120  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 44629988 - 44630037
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcg 133  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||||    
T  44629988 agtgatagaacatgctatgagaaaagtaagaaagcatgaatcctgcagcg 44630037  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 24536524 - 24536573
Alignment:
Q  86 tgatagaacatgctatgag-aaaattaagaaagcacgaaccctgcagcga 134  Q
    ||||||||||||||||||| ||||||||||||||| ||| ||||||||||    
T  24536524 tgatagaacatgctatgagaaaaattaagaaagcatgaatcctgcagcga 24536573  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 17973855 - 17973907
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    ||||||||||||||||||||||||| |||||||||| ||  ||||||| ||||    
T  17973855 agtgatagaacatgctatgagaaaagtaagaaagcatgattcctgcagtgaca 17973907  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 30652505 - 30652453
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    ||||||||||||||||||||||||| |||||||||| ||  ||||||| ||||    
T  30652505 agtgatagaacatgctatgagaaaagtaagaaagcatgattcctgcagtgaca 30652453  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 9183922 - 9183954
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaa 116  Q
    ||||||||||||||||||||||||| |||||||    
T  9183922 agtgatagaacatgctatgagaaaagtaagaaa 9183954  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 12970314 - 12970366
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    ||||||| |||||||||||||||||||||||||||| ||| | ||||||||||    
T  12970314 agtgataaaacatgctatgagaaaattaagaaagcatgaatcatgcagcgaca 12970366  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 8884834 - 8884781
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgacaa 137  Q
    ||||||||||||||||||||||||| |||||||||| ||  ||||||| |||||    
T  8884834 agtgatagaacatgctatgagaaaagtaagaaagcatgattcctgcagtgacaa 8884781  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 3674230 - 3674178
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    ||||||||||||||||||||||||| |||||||||| ||  ||||||| ||||    
T  3674230 agtgatagaacatgctatgagaaaagtaagaaagcatgattcctgcagtgaca 3674178  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 23664626 - 23664678
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    ||||||||||||||||||||||||| |||||||||| ||  ||||||| ||||    
T  23664626 agtgatagaacatgctatgagaaaagtaagaaagcatgattcctgcagtgaca 23664678  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 18468803 - 18468751
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    |||| |||||||||||||||||||| |||||||||| ||  ||||||| ||||    
T  18468803 agtgctagaacatgctatgagaaaagtaagaaagcatgattcctgcagtgaca 18468751  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 12802872 - 12802819
Alignment:
Q  84 agtgatagaacatgctatgagaaaa-ttaagaaagcacgaaccctgcagcgaca 136  Q
    |||||||||||||||||||  |||| ||||||||||||||| ||||||||||||    
T  12802872 agtgatagaacatgctatgccaaaaattaagaaagcacgaatcctgcagcgaca 12802819  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 4241510 - 4241562
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    ||||||||||||||||||||||||| |||||||||| ||  ||||||| ||||    
T  4241510 agtgatagaacatgctatgagaaaagtaagaaagcatgattcctgcagtgaca 4241562  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 16834666 - 16834718
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    ||||||||||||||||||||||||| |||||||||| ||  ||||||| ||||    
T  16834666 agtgatagaacatgctatgagaaaagtaagaaagcatgattcctgcagtgaca 16834718  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 118
Target Start/End: Original strand, 12797275 - 12797309
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagc 118  Q
    |||||||||||||||||||| ||||||||||||||    
T  12797275 agtgatagaacatgctatgataaaattaagaaagc 12797309  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 22693955 - 22694003
Alignment:
Q  88 atagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    ||||||| ||||||||||||||||||||||||  || | ||||||||||    
T  22693955 atagaacgtgctatgagaaaattaagaaagcataaatcttgcagcgaca 22694003  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 10136916 - 10136864
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    ||||||||||||||||||||||||| |||||||||| ||  ||||||| ||||    
T  10136916 agtgatagaacatgctatgagaaaagtaagaaagcatgattcctgcagtgaca 10136864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 25845347 - 25845295
Alignment:
Q  84 agtgatagaacatgctatgagaaaattaagaaagcacgaaccctgcagcgaca 136  Q
    ||||||||||||||||||||||||| |||||||||| ||  ||||||| ||||    
T  25845347 agtgatagaacatgctatgagaaaagtaagaaagcatgattcctgcagtgaca 25845295  T

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