View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10441_low_14 (Length: 394)
Name: NF10441_low_14
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 2355078 - 2355478
Alignment:
| Q |
1 |
ttattatctggaaatatacaaaaggaatgcttatccacaaactacttatgaaagtt---------------taacatgtctatactctagaattcagagc |
85 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2355078 |
ttattatctggaaataaacaaatggaatgcttatgcacaaactacttatgaaagttatactttagcgagtttaacatgtctatactctagaattcagagc |
2355177 |
T |
|
| Q |
86 |
ttaatcaataatgaaaggaggcacgtaaaaataaaactaaattgaagagttgccttgcagtagagagatttaccgcatttgcatcgtgattgtcaatgcc |
185 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2355178 |
ttaatcaataacgaaaggaggcatgtaaaaataaaactaaattgaagagttgccttgtagtagagagatttaccgcatttgcatcgtgattgtcaatgcc |
2355277 |
T |
|
| Q |
186 |
tgggattgatgtaacaactttaaggtaaaagttcattccttgcaccaactgcttcctcttcaaaaccataacaaaatttaaacatcaatttgctagtttc |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2355278 |
tgggattgatgtaacaactttaaggtaaaagttcattccttgcaccaactgcttcctcttcaaaaccataacaaaattcaaacatcaatttgctagtttc |
2355377 |
T |
|
| Q |
286 |
acttcatatgtgattagtagcagctaaatagtatgaaattttattgtaaaatcaatgagctgacctcacctcagccttcagtttttcttcaattctctgc |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2355378 |
acttcatatgtgattagtagcagctaaatagtatgaaattttattgtaaaatcaatgagctgacctcacctcagctttcagtttttcttcaattctctgc |
2355477 |
T |
|
| Q |
386 |
t |
386 |
Q |
| |
|
| |
|
|
| T |
2355478 |
t |
2355478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 258 - 386
Target Start/End: Complemental strand, 2222689 - 2222561
Alignment:
| Q |
258 |
aaaatttaaacatcaatttgctagtttcacttcatatgtgattagtagcagctaaatagtatgaaattttattgtaaaatcaatgagctgacctcacctc |
357 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2222689 |
aaaattcaaacatcaatttgctagtttcacttcatatgtgattagtagcagctaaatagtatgaaattttattgtaaaatcaatgagctgacctcacctc |
2222590 |
T |
|
| Q |
358 |
agccttcagtttttcttcaattctctgct |
386 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
2222589 |
agctttcagtttttcttcaattctctgct |
2222561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 38144726 - 38144781
Alignment:
| Q |
1 |
ttattatctggaaatatacaaaaggaatgcttatccacaaactacttatgaaagtt |
56 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38144726 |
ttattatctggaaatatacgaaaggaatgcttatgcacaaactacttatgaaagtt |
38144781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University