View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_16 (Length: 390)
Name: NF10441_low_16
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_16 |
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| [»] scaffold0288 (1 HSPs) |
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| [»] scaffold0475 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 384
Target Start/End: Complemental strand, 49330905 - 49330543
Alignment:
| Q |
15 |
agagagtaaatatcagggtcaaaatatgaatccatatagaacaaaatcaaatggaggaatagatacaaaacaacaaatcaacttattcattgatatcctc |
114 |
Q |
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||||||||||||||||||| ||||||| |||||| |||||||| |||| |||||||||||||||||||||||||| ||||||| |||||| |||||| |
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| T |
49330905 |
agagagtaaatatcagggttaaaatatcaatccacgtagaacaatatcacatggaggaatagatacaaaacaacaattcaacttgttcattactatcct- |
49330807 |
T |
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| Q |
115 |
ctagtcaacacatgtgatgtattaattcccttcttgcgaacggcatagtaacataaaccaaacattataattttcctttgtaatttttcgacattgtttt |
214 |
Q |
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||| |||||||||||||||||| ||||||||||||||||| |||| ||||||||||| || |||||||||||||||||||| ||||| ||| |||||| |
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| T |
49330806 |
--agttaacacatgtgatgtattacttcccttcttgcgaacgacatactaacataaacctaagattataattttcctttgtaacttttccacactgtttt |
49330709 |
T |
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| Q |
215 |
gctaaattcttcaaataaaaaacagcgaaattgttcagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctg |
314 |
Q |
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|||||||| | || ||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||| | | |
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| T |
49330708 |
gctaaattttacatataaaaaacagcgaaattgttcaattgagttgcttatatttcagtttcaccatccaatttgattctcaagtctgtgctacctaccg |
49330609 |
T |
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| Q |
315 |
attcgggaaaaatgtagagcatcacgatttgcttatgattccgctatttcagcttcatcaatttcataga |
384 |
Q |
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| T |
49330608 |
attcggaaaaaatgtagagcatcacgatttgcttctg----tgccattttagcttcatcaatttcataga |
49330543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 250 - 383
Target Start/End: Original strand, 4660393 - 4660526
Alignment:
| Q |
250 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
349 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4660393 |
cagttgagttgcttatattacaacttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
4660492 |
T |
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| Q |
350 |
tgattccgctatttcagcttcatcaatttcatag |
383 |
Q |
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| T |
4660493 |
tgattccgctattttagcttcatcaatttcatag |
4660526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 250 - 380
Target Start/End: Original strand, 20558 - 20688
Alignment:
| Q |
250 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
349 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||| |||||||||| || |||| |||||| ||||||||||||||||||| ||||||||||| |
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| T |
20558 |
cagtggagttgcttatattacaacttccccatccaatttgataatcaagtctgggccacctcctgatttgggaaaaatgtagagcatcccgatttgctta |
20657 |
T |
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| Q |
350 |
tgattccgctatttcagcttcatcaatttca |
380 |
Q |
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|||||||||||||| ||||| ||||| |||| |
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| T |
20658 |
tgattccgctattttagctttatcaaattca |
20688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 250 - 330
Target Start/End: Original strand, 7691 - 7771
Alignment:
| Q |
250 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgta |
330 |
Q |
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|||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
7691 |
cagttgagttgcttatattacaacttccccctccgatttgattatcaagtctgtgctacctcctgattcaggaaaaatgta |
7771 |
T |
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