View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10441_low_17 (Length: 388)
Name: NF10441_low_17
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 2794937 - 2794575
Alignment:
| Q |
18 |
ataaccaatattcacaagtttctcattaggatcaatgggtttagccttcaaggcaggcacatgaatttcttgataaccttttctcggaagcctgtaagac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794937 |
ataaccaatattcacaagtttctcattaggatcaatgggtttagccttcaaggcaggcacatgaatttcttgataaccttttctcggaagcctgtaagac |
2794838 |
T |
|
| Q |
118 |
ccatcaggaagatcacattttccctttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaagtatccggcattgacccccattttccc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
2794837 |
ccatcaggaagatcacattttccctttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaagcatccggcgttgacccccattttccc |
2794738 |
T |
|
| Q |
218 |
caactccatcaccagttcccctatcaatgtccatgtccccgtctttcaaccttcgagcctcgtaccttatactcttctccaagttcttctccctctctat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794737 |
caactccatcaccagttcccctatcaatgtccatgtccccgtctttcaaccttcgagcctcgtaccttatactcttctccaagttcttctccctctctat |
2794638 |
T |
|
| Q |
318 |
agtagaggctttcacaacatataactcctccaaaattgactccaaattcgaccccttcatctc |
380 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794637 |
agtagaggctttcacagcatataactcctccaaaattgactccaaattcgaccccttcatctc |
2794575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 29262440 - 29262277
Alignment:
| Q |
28 |
ttcacaagtttctcattaggatcaatgggtttagccttcaaggcaggcacatgaatttcttgataaccttttctcg-gaagcctgtaagacccatcagga |
126 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||||||||||||| || || |||||||| |||| |||||||||| ||| || |||| ||||||||||||||| |
|
|
| T |
29262440 |
ttcaaaagcttctcattaggatcaaggggtttagccttcaatgctggaacatgaatctcttcataacctttt-tcgagatgcctataagacccatcagga |
29262342 |
T |
|
| Q |
127 |
agatcacattttccctttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaag |
191 |
Q |
| |
|
|| ||||||||| ||||| |||||| || |||||||||||||||| |||||||| |||||||| |
|
|
| T |
29262341 |
aggtcacattttttctttgccataaataacccaccttgttcaaaagtgaggttatctaaatcaag |
29262277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University