View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10441_low_18 (Length: 385)
Name: NF10441_low_18
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 30711299 - 30711426
Alignment:
| Q |
8 |
gataaacaatgtctgtgttgtcaaaaatatcggattaaagcaatgagagaatatcaaatcagctcaaccatccaaaatcaactcattttgcacttgaaat |
107 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
30711299 |
gataaacaatgcctatgttgtcaaaaatatcggattaaagcaatgagagaataccaaatcagctcaaccatgcaaaatcaactcattttggacttgaaat |
30711398 |
T |
|
| Q |
108 |
acacaacatgacattacaattcaagaat |
135 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
30711399 |
acacaacatgacattacaattcaagaat |
30711426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 30051956 - 30051852
Alignment:
| Q |
31 |
aaaatatcggattaaagcaatgagagaatatcaaatcagctcaaccatccaaaatcaactcattttgcacttgaaatacacaacatgacattacaattca |
130 |
Q |
| |
|
|||| |||||| |||||||||||||||||| |||||||| |||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
30051956 |
aaaagatcggactaaagcaatgagagaataccaaatcaggtcaaccatgcaaaatcaactcattttggacttgaaatacacaagatgacattacaattca |
30051857 |
T |
|
| Q |
131 |
agaat |
135 |
Q |
| |
|
||||| |
|
|
| T |
30051856 |
agaat |
30051852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 30658828 - 30658958
Alignment:
| Q |
8 |
gataaacaatgtctgtgttgtcaaaaatatcggattaaagcaatgagagaatat---caaatcagctcaaccatccaaaatcaactcattttgcacttga |
104 |
Q |
| |
|
||||||||||| | ||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
30658828 |
gataaacaatgcccgtgttgtcaaaaagatcggactaaagcaatgagagaataataccaaatcagctcaaccatgcaaaatcaactcattttggtcttga |
30658927 |
T |
|
| Q |
105 |
aatacacaacatgacattacaattcaagaat |
135 |
Q |
| |
|
|| |||||||||| ||||||||||||||||| |
|
|
| T |
30658928 |
aaaacacaacatggcattacaattcaagaat |
30658958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 254 - 385
Target Start/End: Original strand, 30711547 - 30711681
Alignment:
| Q |
254 |
ggttacggataatcacatagttaactcatccataaaacaaaata---gtattaatacaattaaaacaaaatagtaa--ttctatagttcaagaaatagaa |
348 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| ||| || |||| | |||||||||||||||||||||| |
|
|
| T |
30711547 |
ggttacggataatcatatagttaactcatccataaaacaaaatactagtattcatacaatttaaa--aattagttaatttctatagttcaagaaatagaa |
30711644 |
T |
|
| Q |
349 |
tcttaaaaaatgacaatgttttattaaaagagagaga |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30711645 |
tcttaaaaaatgacaatgttttattaaaagacagaga |
30711681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 30063747 - 30063643
Alignment:
| Q |
31 |
aaaatatcggattaaagcaatgagagaatatcaaatcagctcaaccatccaaaatcaactcattttgcacttgaaatacacaacatgacattacaattca |
130 |
Q |
| |
|
|||| |||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
30063747 |
aaaagatcggactaaggcaatgagagaataccaaatcagctcaaccatgcaaaatcaacttattttgaagttgaaatacacaacatgacattacaattca |
30063648 |
T |
|
| Q |
131 |
agaat |
135 |
Q |
| |
|
||||| |
|
|
| T |
30063647 |
agaat |
30063643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University