View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_19 (Length: 383)
Name: NF10441_low_19
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 378
Target Start/End: Original strand, 2354715 - 2355076
Alignment:
| Q |
17 |
attaacaaatatccccatcacttgaatctggatttctttgttattttgtgatcagttgatcttgagacgtaagtaagactttgggtctctgagaaacctt |
116 |
Q |
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||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2354715 |
attaacatctatccccatcacttgaatcttgattcctttgttattttgtgatcagttgatcttgggacgtaagtaagactttgggtctctgagaaacctt |
2354814 |
T |
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| Q |
117 |
gaaatcatttctgccttgtcagtagaaagatctgtgttctccagaatttgctcttttgataccttggcaattgcttggacagaaccaatagcttgactaa |
216 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2354815 |
gaaatcatctctgccttgtcagtagaaagatctgtgttctccagaatttgcccttttgataccttggcaattgcttggacagaaccaatagcttgactaa |
2354914 |
T |
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| Q |
217 |
gctgaattgagtgatcagaaaaacaaaataactcaacctataagcatggctattatacggtttttcatgtaacaaagtcattatcatgtggtaaagacta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |
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| T |
2354915 |
gctgaattgagtgatcagaaaaacaaaataactcaacctataagcatggctattatacggtttttcatgtaacaaagttattattatgtgataaagacta |
2355014 |
T |
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| Q |
317 |
tccccagccagtaggaaaatagcacaagcctaacatagcatgaaaactttgacatcaatgca |
378 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
2355015 |
cccccagccagtaggaaaatagcacaagactaacatagcatgaaaactttgacaccaatgca |
2355076 |
T |
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