View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_20 (Length: 362)
Name: NF10441_low_20
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 50557481 - 50557816
Alignment:
| Q |
17 |
attattgacgattagaggagtaatattcaccgatacttcagtttttatattttaaaaatagaacaagaaaaaccataaagttgactttttcctgcttttg |
116 |
Q |
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| T |
50557481 |
attattggcgattagaggagtaatattcaccgatacttcagtttttatattttaaaaatagaacaagaaaaaccataaagttgactttttcctgcttttg |
50557580 |
T |
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| Q |
117 |
cagctacatctgatatgacaaaaatgaaatagcagccactattacccgattgcaaaactaggatagtgtcgcagttttcaaaagcattcgtcaaaatccg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
50557581 |
cagctacatctgatatgacaaaaatgaaatagcagccactattacccaactgcgaaactaggatagtgtcgcagttttcaaaagcattcgtcaaaatctg |
50557680 |
T |
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| Q |
217 |
ctccactatagtacccctatttgacaaaacttcacataataactacaaagtcctcaaattgcatgaaggtaatatcttaccgtgtggaagaacacattgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50557681 |
ctccactatagtacccctatttgacaaaacttcacataataactacaaagtcctcaaattgcatgaaggtaatatcttaccgtgtggaagaacacattgt |
50557780 |
T |
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| Q |
317 |
cttttcccataaactgatacagctccacattctctg |
352 |
Q |
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| T |
50557781 |
cttttcccataaactgatacagctccacattctctg |
50557816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 29770098 - 29770139
Alignment:
| Q |
309 |
cacattgtcttttcccataaactgatacagctccacattctc |
350 |
Q |
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| T |
29770098 |
cacattgtcctttcccataaactgaaacaactccacattctc |
29770139 |
T |
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