View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_21 (Length: 359)
Name: NF10441_low_21
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 23904620 - 23904276
Alignment:
| Q |
1 |
cctcaacgccatcggcaaagtaatgagccaccctttgtgatgcatctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttct |
100 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23904620 |
cctcaaggccattggcaaagtaatgagccaccctttgtgatgcatctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttct |
23904521 |
T |
|
| Q |
101 |
attgtcattggcatacatagcttgtgaacacataagcagaagattccttaaatctattgttttgtttttgctatcacgtttcttcggacgaacctttcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23904520 |
attgtcattggcatacatagcttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcacgtttcttcggacgaacctttcct |
23904421 |
T |
|
| Q |
201 |
tcattagatgaaggtagttgctcattctgcaaaggttcacggtccacattaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacac |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23904420 |
tcattagatgaaggtggttgctcattctgcaaaggttcacggtccacattaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacac |
23904321 |
T |
|
| Q |
301 |
taatagccgattgcttgttactactcccttcttcttcttcgcgcc |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23904320 |
taatagccgattgcttgttactactcccttcttcttcttcgcgcc |
23904276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 23922364 - 23922708
Alignment:
| Q |
1 |
cctcaacgccatcggcaaagtaatgagccaccctttgtgatgcatctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttct |
100 |
Q |
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|||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23922364 |
cctcaaggccattggcaaagtaatgagccaccctttgagatgcttctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttct |
23922463 |
T |
|
| Q |
101 |
attgtcattggcatacatagcttgtgaacacataagcagaagattccttaaatctattgttttgtttttgctatcacgtttcttcggacgaacctttcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23922464 |
attgtcattggcatacatagcttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcacgtttcttgggacgaacctttcct |
23922563 |
T |
|
| Q |
201 |
tcattagatgaaggtagttgctcattctgcaaaggttcacggtccacattaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacac |
300 |
Q |
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| T |
23922564 |
tcgttagatgaaggtggttgctcattctgcaaaaattcacgttccacgttaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacac |
23922663 |
T |
|
| Q |
301 |
taatagccgattgcttgttactactcccttcttcttcttcgcgcc |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23922664 |
taatagccgattgcttgttactactcccttcttcttcttcgcgcc |
23922708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 23912349 - 23912510
Alignment:
| Q |
1 |
cctcaacgccatcggcaaagtaatgagccaccctttgtgatgcatctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttct |
100 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| |||||||| | |||| ||| |||||||||||||||||||||||||||| | || ||||||||||| || |
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| T |
23912349 |
cctcaaggccattggcaaagtaatgagccaacctttgtggtccatccccagagggtgaagaatgttgcctaatctgcttcagtagctcattagcattcct |
23912448 |
T |
|
| Q |
101 |
attgtcattggcatacatagcttgtgaacacataagcagaagattccttaaatctattgttt |
162 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23912449 |
gttgtcattggcatacacagattgtgaacacataagcagaagattccttaaatctattgttt |
23912510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 23912628 - 23912726
Alignment:
| Q |
244 |
ccacattaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacactaatagccgattgcttgttactactcc---cttcttcttctt |
339 |
Q |
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|||||||||||||| | ||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |||| |||| |||||||||||| |
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| T |
23912628 |
ccacattaagcaaaaccttatcaaacatctctgataattcatcctcatcaacagcactaatagctgattgcttgctacttctccaagcttcttcttctt |
23912726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 41597824 - 41597707
Alignment:
| Q |
15 |
gcaaagtaatgagccaccctttgtgatgcatctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttctattgtcattggcat |
114 |
Q |
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|||||||||||||||| || ||||||||||| || | || |||||||| | |||||||||||| || | ||||||||| | ||||||||||| ||| |
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| T |
41597824 |
gcaaagtaatgagccattctctgtgatgcatcacctgaaggagaagaatggttcctaatctgcttcaacaattcattagcagtcctattgtcattagcag |
41597725 |
T |
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| Q |
115 |
acatagcttgtgaacaca |
132 |
Q |
| |
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| | |||||||| ||||| |
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| T |
41597724 |
atacagcttgtgcacaca |
41597707 |
T |
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