View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_23 (Length: 356)
Name: NF10441_low_23
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_23 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 62 - 327
Target Start/End: Original strand, 360799 - 361066
Alignment:
| Q |
62 |
gaatgcaggtgaatccatatactgagacaaaagttaacagaatgaatataatcattagataaagttcaaagaacaagattattagagacagtgtagnnnn |
161 |
Q |
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|||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
360799 |
gaatgcagatgaatccatatacagagacaaaggttaacagaatgaataaaatcattagataaagttcaaaaaacaagattattagagacagtgtagaaaa |
360898 |
T |
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| Q |
162 |
nnnnnntagatataaaaagtaccgattcagatttcagtgcaactatttctttgnnnnnnnggtacaaaactgtctccctgtagacatat--atatactgt |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
360899 |
aaaaaatagatataaaaagtaccgattcagatttcagtgcaactatttctttgtttttttggtacaaaactgtctccctgtagacatatatatatactgt |
360998 |
T |
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| Q |
260 |
acagagataggtgagaaactaaattacctgtttacatatgctaactcattcacgtgctttaaaggaaa |
327 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
360999 |
acagagataggtgagaaactaaattacctgtttatatatgctaactcattcacgtgctttaaaggaaa |
361066 |
T |
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