View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10441_low_24 (Length: 355)
Name: NF10441_low_24
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 49885824 - 49886159
Alignment:
| Q |
1 |
agggtacagaacagtgaattgattggcacagacaacggtttgagaataaaatcatttccagagagatttgctggtggagcatctgagatatttttcacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49885824 |
agggtacagaacagtgaattgattggcacagacaacggtttgagaataaaatcatttccagagagatttgctggtggagcatctgagatatttttcacta |
49885923 |
T |
|
| Q |
101 |
acattaacatgacaaatgttaaaaatccaatcattattgaccaggagtatgaatgtgatgatatttgtaaaaagaaggtacttatttgcactacaacaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49885924 |
acattaacatgacaaatgttaaaaatccaatcattattgaccaggaatatgaatgtgatgatatttgtaaaaagaaggtacttatttgcactacaacaaa |
49886023 |
T |
|
| Q |
201 |
aactattttaacagcaagatgttaataattgtgatacttatatatttattttcgtgcatgcagccttcattggtgaagattgcaaatattcatttttcaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49886024 |
aactattttaacagcaagatgttaataattgtgatacttatatatttatttacg----tgcagccttcattggtgaagattgcaaatattcatttttcaa |
49886119 |
T |
|
| Q |
301 |
atataaggggaacttcagctacaccaatggtagtggatat |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49886120 |
atataaggggaacttcagctacaccaatggtagtggatat |
49886159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University