View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10441_low_27 (Length: 335)
Name: NF10441_low_27
Description: NF10441
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10441_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 2363470 - 2363788
Alignment:
| Q |
1 |
aacaactcctcttgagattcttataaagccacgtttgtcttcgaattgttatgaaattatgtgactttgtgttagcattatatttataatattttgtgtt |
100 |
Q |
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| T |
2363470 |
aacaactcctcttgagattcttataaagccacgtttgtcttcgaattgttatgaaattatgtgactttgtgttagcattatatttataatattttgtgtt |
2363569 |
T |
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| Q |
101 |
ttcaaactttgtaatcctttgagactcatactgtgttagttgtgtaatcctttgtgatatttggtgtacttcatttgttgatatgtaatataatttggat |
200 |
Q |
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| T |
2363570 |
ttgaaactttgtaatcctttgagactcatactgtgttagttgtgtaatcctttgtgatatttggtgtacttca-ttgttgatatgtaatataatttggat |
2363668 |
T |
|
| Q |
201 |
taaagtgaaagttgttgaatttatcctaattcatttacacatttggttccatgattataagctaacaagtgtccataaagtattgttttagcatcttaaa |
300 |
Q |
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| T |
2363669 |
taatgtgaaagttgttgaatttatcctaattcatttacacatttggttccatgattataagctaacaagtatctttaaagtattattttagcatcttaaa |
2363768 |
T |
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| Q |
301 |
ttagtaatttttacatgttt |
320 |
Q |
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| T |
2363769 |
gtagtaatttttacatgttt |
2363788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 2369216 - 2369404
Alignment:
| Q |
1 |
aacaactcctcttgagattcttataaagccacgtttgtcttcgaattgttatgaaattatgtga-ctttgtgttagcattata----tttataat----- |
90 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| || |||| |||| ||||| ||| |||| |
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| T |
2369216 |
aacaactcctcttgagattcttattaagccacgtttgtcttcgaattgctatgaaattatgtgatctctgtgctagctttataatactttgtaatttgta |
2369315 |
T |
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| Q |
91 |
attt-tgtgttttcaaactttgtaatcctttgagactcatactgtgttagttgtgtaatcctttgtgata-tttggtgtacttcatttg |
177 |
Q |
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| T |
2369316 |
atttgtctattttcaaactatgtaatcctttcagatccatgttgtgttagttgtggaataatttgtgatattttggtgtacttcatttg |
2369404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 4306170 - 4306222
Alignment:
| Q |
3 |
caactcctcttgagattcttataaagccacgtttgtcttcgaattgttatgaa |
55 |
Q |
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||||||| || ||||||||||| ||||| |||||| |||| |||||||||||| |
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| T |
4306170 |
caactccactagagattcttattaagcctcgtttgccttctaattgttatgaa |
4306222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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